Table 1 Anchoring of melon genome assembly v 3.5.1 to the PS x SC F2 genetic map
LG | LG size(cM) | SNPs used in map construction | Scaffolds anchored* | Genome anchored (bp) | % Scaffold assembly | Oriented scaffolds | Genome oriented (bp) | % Scaffold assembly | Recombination rate (cM/Mb) |
|---|---|---|---|---|---|---|---|---|---|
I | 91.5 | 53 | 14 | 35,370,099 | 9.8 | 11 | 35,197,227 | 9.7 | 2.6 |
II | 100.8 | 40 | 9 | 26,185,771 | 7.2 | 8 | 26,070,550 | 7.2 | 3.9 |
III | 86.8 | 39 | 9 | 29,379,469 | 8.1 | 7 | 28,223,253 | 7.8 | 3.0 |
IV | 76.8 | 65 | 18 | 33,106,231 | 9.2 | 10 | 30,831,195 | 8.5 | 2.3 |
V | 110.5 | 29 | 6 | 28,332,775 | 7.8 | 4 | 19,742,536 | 5.5 | 3.9 |
VI | 113.6 | 54 | 13 | 35,927,859 | 9.9 | 7 | 33,605,504 | 9.3 | 3.2 |
VII | 105.8 | 57 | 14 | 26,760,857 | 7.4 | 9 | 26,066,430 | 7.2 | 4.0 |
VIII | 103.2 | 56 | 14 | 32,500,408 | 9.0 | 9 | 28,100,052 | 7.8 | 3.2 |
IX | 98.4 | 39 | 7 | 24,101,567 | 6.7 | 7 | 24,101,567 | 6.7 | 4.1 |
X | 67.2 | 56 | 16 | 25,347,316 | 7.0 | 8 | 18,851,255 | 5.2 | 2.7 |
XI | 107.3 | 60 | 14 | 31,429,130 | 8.7 | 13 | 31,190,979 | 8.6 | 3.4 |
XII | 91 | 32 | 7 | 26,394,393 | 7.3 | 6 | 25,034,488 | 6.9 | 3.8 |
Total | 1162 | 580 | 141 | 354,835,875 | 98.2 | 99 | 327,015,036 | 90.5 | 3.3 |