Table 3 Summary statistics for EST and de novo assembly
| Â | Total | Brown | Orange |
|---|---|---|---|
NO. of raw reads | 1,416,522 | 610,701 | 805,821 |
Average length (bp) | 282 | 257 | 301 |
% reads removed | 16.62 | 25.51 | 11.05 |
NO. of reads after cleaning | 1,181,060 | 454,933 | 716,797 |
Average length of cleaned reads (bp) | 308 | 297 | 310 |
NO. of reads assembled as isotigs | 1,070,902 | NA | NA |
NO. of isotigs | 49,717 | NA | NA |
Average length of isotigs | 580 | NA | NA |
Range of isotig lengths | 50 - 7,102Â bp | NA | NA |
Isotigs above 200Â bp | 43,763 | NA | NA |
NO. of singletons | 110,158 | NA | NA |
Average length of singletons | 296 | NA | NA |
Range of singletons lengths | 50 - 654Â bp | NA | NA |
Singletons above 200Â bp | 80,501 | NA | NA |
NO. of unique sequences a | 159,875 | NA | NA |
NO. of unique sequences (left after CD-hit) | 111,670 | NA | NA |
Unique sequences above 200 bases | 87,120 | NA | NA |