SNP class | No. of SNPs | No. of SNPs in category | |||||||
---|---|---|---|---|---|---|---|---|---|
SNP | mSNP | Indel | SNP-SNP | Indel-SNP | SNP-in-Insertion | F1D | Codon-based | ||
MHR | 18,958 | 9,913 | 191 | 2,458 | 737 | 286 | 1,114 | 1,864 | 2,395 |
CRBT | 5,876 | 4,248 | 0 | 542 | 761 | 96 | 144 | 44 | 41 |
Other | 9,755 | 6,014 | 0 | 1,214 | 1,387 | 196 | 428 | 150 | 366 |
NMH | 36,088 | 25,782 | 1,050 | 3,365 | 979 | 298 | 843 | 1,498 | 2,273 |
OTV | 1,030 | 415 | 1 | 106 | 126 | 21 | 11 | 38 | 312 |
PHR | 23,355 | 16,891 | 519 | 1,843 | 3,101 | 280 | 303 | 157 | 261 |
Reproducibility | 3,263 | 2,568 | 129 | 200 | 182 | 17 | 39 | 55 | 73 |
AAvarianceY | 491 | 339 | 10 | 38 | 82 | 8 | 8 | 1 | 5 |
ABvarianceX | 1,775 | 1,095 | 11 | 221 | 328 | 32 | 32 | 18 | 38 |
ABvarianceY | 3,212 | 2,367 | 54 | 279 | 384 | 51 | 34 | 14 | 29 |
BBvarianceY | 394 | 183 | 6 | 43 | 144 | 7 | 5 | 2 | 4 |
nMinorHom | 1,611 | 1,153 | 87 | 176 | 53 | 17 | 31 | 33 | 61 |
Filtered PHR | 12,609 | 9,186 | 222 | 886 | 1,928 | 148 | 154 | 34 | 51 |
No of markers on array | 95,063 | 63,263 | 1,761 | 9,528 | 7,092 | 1,177 | 2,843 | 3,751 | 5,648 |