Comparative transcriptomics of a complex of four European pine species

BMC Genomics

Table 3 Mapping statistics of the samples to the reference transcriptome sequence (2_GT_31)

Sample ID	Species	Total reads	Mapped reads	% Mapped reads	% Duplicate reads	% Mapped reads as proper pairs	Number of SNPs
1_SD_30	P. sylvestris	31116472	26922787	86.52	26.36	84.14	67817
2_GT_31	P. sylvestris	258401512	229042493	88.64	43.22	85.34	81519
3_Punk_39	P. sylvestris	37849782	31980676	84.49	34.37	80.21	63874
4_Jar_43	P. sylvestris	38970706	31951845	81.99	19.34	79.47	94021
5_Trev_37	P. sylvestris	45140044	38150182	84.52	19.44	81.73	95814
6_SC_5	P. mugo	43752078	35804512	81.83	24.08	78.50	116762
7_BH_9	P. mugo	32600000	26565484	81.49	26.23	78.40	103818
8_Abr_16	P. mugo	40104880	33111153	82.56	29.18	78.19	100602
9_Alps_12	P. mugo	52934684	43411825	82.01	23.36	78.67	130942
10_Sdt_1	P. mugo	69248828	57560565	83.12	28.02	80.03	138989
11_CC_28	P. uncinata	34805254	28627271	82.25	16.74	79.34	102037
12_LaT_23	P. uncinata	30291214	24678075	81.47	36.80	78.06	87181
13_VdR_17	P. uncinata	45834740	36942040	80.60	18.27	77.85	118800
14_Val_24	P. uncinata	48550644	39819426	82.02	21.98	79.12	115050
15_Weg_57	P. uliginosa	52718596	42948249	81.47	18.33	78.55	127068
16_Bat_59	P. uliginosa	40729720	33913094	83.26	21.04	80.38	116297
17_Mit_58	P. uliginosa	69457322	57212028	82.37	22.07	79.37	147646
Merged	All	976529136	817402576	83.70	26.12	80.58	164104

ISSN: 1471-2164