Table 2 Genome coverage of TE families (10,283 copies of 286 REPET consensus sequences)
TE copies | Copy number | Coverage relative to TE space | Coverage relative to assembly size | ||
|---|---|---|---|---|---|
LTR | 1018 | 27.70 | Class I 35.64 | 3.89 | Class I 5.01 |
DIRS | 57 | 1.34 | 0.19 | ||
LINE | 392 | 6.61 | 0.93 | ||
SINE | 0 | 0 | 0 | ||
TIR | 438 | 12.18 | Class II 22.76 | 1.71 | Class II 3.20 |
MITE | 39 | 0.39 | 0.06 | ||
Helitron | 373 | 10.18 | 1.43 | ||
Unknown | 1942 | 41.60 | 41.60 | 5.85 | 5.85 |
Total | 4259 | 100 | 100 | 14.06 | 14.06 |