Fig. 1From: NanoCAGE-XL and CapFilter: an approach to genome wide identification of high confidence transcription start sitesPercent of genes with the majority of reads mapping within each gene quartile. All identified protein coding genes were divided into four even quartiles numbered from 5′ - > 3′ position relative to the gene sequence. The number of reads whose 5′ most base resided in a given quartile (x-axis) was counted, and the percent of genes (y-axis) with the majority of reads in a given quartile was plotted. The total number of genes analyzed was: 25842, 21804, 20552, 20909, 20567, 19095, 20438, 19432, 19733, and 20785 for samples S1BALA, S2BPLP, S3BPLP, S4BPLP, S5BPLA, S6BPLA, S7BPLA, S8BPLA, S9BPLA, and S10BPLA respectively, with 22468 and 22223 genes analyzed for samples in experiment 2 and 3 combined, respectively. Bracketed bars with a ‘*’ symbol denotes libraries prepared with a linker sequence in the template switching oligoBack to article page