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Fig. 8 | BMC Genomics

Fig. 8

From: Characterization of a second secologanin synthase isoform producing both secologanin and secoxyloganin allows enhanced de novo assembly of a Catharanthus roseus transcriptome

Fig. 8

Clustering of redundant contigs in the dataset resulting from the combination of all single assemblies. Contigs sharing a given % of identity were clustered with CD-HIT-EST. a Number of clusters after CD-HIT-EST at % identity thresholds fixed from 90 to 100 %. b Reconstruction quality of MIA genes in the current resources (A = ccOrcae, B = mpgrCra, C = NIPGR, D = PMS454, E = PMSIllu) and the datasets resulting from the clustering by CD-HIT-EST at % identity thresholds. Reference MIA gene sequences were BLASTed against each assembly and the resulting bitscore was compared to that of an ideal sequence (bitscore of the reference sequence against itself, i.e. bitscore ratio = 1)

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BMC Genomics

ISSN: 1471-2164

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