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Fig. 1 | BMC Genomics

Fig. 1

From: Chromosomal copy number variation reveals differential levels of genomic plasticity in distinct Trypanosoma cruzi strains

Fig. 1

Competitive mapping and SNP content of the T. cruzi strains from different DTUs. In competitive mapping, whole-genome shotgun reads from the T. cruzi Arequipa, Colombiana, Sylvio, Esmeraldo, Y and 231 strains were simultaneously mapped to the 41 chromosomal sequences from Esmeraldo-like (Esmo-like) and non-Esmeraldo-like (Non-Esmo) CL Brener haplotypes, and their mean read depth coverage (RDC) was estimated. Each black bar corresponds to the mean RDC of each of the 41 CL Brener chromosomes (a). For each T. cruzi strain, the mean RDC of the CL Brener haplotype with the highest RDC in the competitive mapping (non-Esmeraldo for Arequipa, Sylvio and 231; Esmeraldo-like for Esmeraldo and Y) was divided by the mean RDC of the CL Brener haplotype with the lower RDC (Esmeraldo-like for Arequipa, Sylvio and 231; non-Esmeraldo for Esmeraldo and Y) (b). The SNP density of each T. cruzi strain and the 1563 Esmeraldo-like/non-Esmeraldo-like single-copy genes are shown (c)

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BMC Genomics

ISSN: 1471-2164

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