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Table 2 Positively selected genes with functions, identified in Arctic and red fox using the branch site test

From: Genetic signatures of adaptation revealed from transcriptome sequencing of Arctic and red foxes

Dog Ensemble transcript ID

Gene Name

Uniprot function

Function (Additional details)

Arctic fox

ENSCAFT00000048935

GLTPD1

Glycolipid transfer protein domain containing 1

Glycolipid binding, Phospholipid binding.

Lipid deposition in chicken [23].

ENSCAFT00000008666

AKT2

V-akt murine thymoma viral oncogene homolog 2

ATP binding.

Regulation of fatty acid beta-oxidation and insulin signalling [25, 79].

Kinase activity.

ENSCAFT00000001161

N.A.

N.A.

Transmembrane transport.

N.A.

ENSCAFT00000021080

RNASEH2C

Ribonuclease H2, subunit C

RNA catabolic process.

Involved in Aicardi-Goutieres syndrome [80].

Red fox

ENSCAFT00000027282

MAGEE2

Melanoma antigen family E, 2

N.A.

Member of the melanoma antigen family, unknown function [81].

ENSCAFT00000010371

APBB1

Amyloid beta (A4) precursor protein-binding, family B, member 1 (Fe65)

Beta-amyloid binding.

Interacts with the Alzheimer’s disease amyloid precursor protein (APP) [82, 83].

Chromatin binding.

ENSCAFT00000006986

CCDC61

Coiled-coil domain containing 61

N.A.

N.A.

ENSCAFT00000012394

LIX1

Limb Expression 1

N.A

Expressed during chicken and mouse limb development [84, 85].

ENSCAFT00000016648

SLC6A19

Solute carrier family 6, member 19

Neurotransmitter: sodium symporter activity.

Involved in Hartnup disorder [86].

ENSCAFT00000032520

TK2

Thymidine kinase 2

ATP binding. Thymidine kinase activity.

Required for mitochondrial DNA synthesis. Associated with a myopathic form of mitochondrial DNA depletion syndrome [87].

ENSCAFT00000013454

EDIL3

EGF-like repeats and discoidin I-like domains 3

Calcium ion binding. Integrin binding.

Angiogenesis [88, 89] Involved in innate immunity [90].

ENSCAFT00000031005

DFFB

DNA fragmentation factor, 40 kDa, beta polypeptide

DNA binding.

Caspase-activated DNAse. Involved in apoptosis [91, 92].

Desoxyribonuclease activity.

  1. Gene ontology functions were searched in the Uniprot ontology annotation (Uniprot-GOA)