MicroRNAs in the oriental fruit fly, Bactrocera dorsalis: extending Drosophilid miRNA conservation to the Tephritidae

Table 2 Rfam classification. Number of unique sequences classified into each of the 12 main types of non-coding RNAs

	Eggs			Larvae			Male pupae			Female pupae		Ovaries
Type	E01	E02	E03	L01	L02	L03	BP1	BP2	BP3	WP1	WP3	OV1	OV2	OV3
tRNA	788	927	317	1071	504	614	998	730	928	659	867	143	592	839
miRNA	433	901	515	653	782	542	912	551	599	588	660	280	604	748
sno-RNA	395	1018	918	535	577	355	291	186	176	157	189	23	928	1165
tmRNA	416	347	199	773	299	438	635	615	759	328	612	51	270	427
sRNA	248	593	496	321	383	221	238	137	163	108	146	17	606	778
CRISPR	209	584	524	272	372	198	224	136	143	115	128	20	652	815
rRNA	122	283	225	170	248	151	230	174	191	141	162	23	238	381
HACA-box	94	201	187	132	126	112	68	47	45	45	50	6	205	270
splicing	63	87	80	318	208	157	34	27	31	35	35	2	152	197
riboswitch	33	124	106	48	74	40	52	27	33	24	19	3	128	146
misc. cis-reg	507	1212	1157	581	756	424	403	250	276	198	264	18	1250	1619
others	163	446	393	282	316	200	213	108	128	103	107	12	489	640
TOTAL	3471	6723	5117	5156	4645	3452	4298	2988	3472	2501	3239	598	6114	8025

ISSN: 1471-2164