Skip to main content

Table 4 miRNA clusters in B. dorsalis

From: MicroRNAs in the oriental fruit fly, Bactrocera dorsalis: extending Drosophilid miRNA conservation to the Tephritidae

miRNA

Scaffold

Coordinates

Strand

Mature sequence

Mature read count

bdo-mir-2a-2

scaffold00002

2204161..2204222

-

ucacagccagcuuugaugagcua

11192

bdo-mir-2a-1

scaffold00002

2204624..2204688

-

uaucacagccagcuuugaugagcu

7541

bdo-mir-2b

scaffold00002

2205153..2205237

-

uaucacagccagcuuugaggagcg

10527

bdo-mir-11593

scaffold00003

476312..476370

+

uccaugaaauucuguaauucug

1914

bdo-mir-11594

scaffold00003

477604..477663

+

guccaugaaauucuuuauuucug

224

bdo-mir-11

scaffold00005

2323679..2323748

+

caucacagucugaguucuugcu

2123

bdo-mir-998

scaffold00005

2326077..2326163

+

uagcaccaugagauucagcuc

243

bdo-mir-100

scaffold00010

2862114..2862173

+

aacccguaaauccgaacuugug

82

bdo-let-7

scaffold00010

2862318..2862376

+

ugagguaguagguuguauagu

516

bdo-mir-125

scaffold00010

2862662..2862722

+

ucccugagacccuaacuuguga

196

bdo-mir-2c

scaffold00020

1019361..1019426

+

ucacagccagcuuugaugagca

4392

bdo-mir-13b

scaffold00020

1021893..1021957

+

uaucacagccauuuugacgaguu

2289

bdo-mir-9b

scaffold00027

1320119..1320184

-

ucuuuggugauuuuagcuguaug

1582

bdo-mir-79

scaffold00027

1321251..1321313

-

uaaagcuagauuaccaaagcau

4037

bdo-mir-306

scaffold00027

1321793..1321859

-

ccagguacuuagugacucuca

1412

bdo-mir-9c

scaffold00027

1324096..1324160

-

ucuuugguauucuagcuguaga

1336

bdo-mir-5

scaffold00054

203234..203297

-

aaaggaacguucguugugauau

676

bdo-mir-4

scaffold00054

203558..203615

-

auaaagcuagacaaccauugca

668

bdo-mir-309b

scaffold00054

203736..203796

-

ucacuggguaaaguuuguccca

542

bdo-mir-6

scaffold00054

203902..203964

-

uaucacaguggcuguuccuuau

1764

bdo-mir-5b

scaffold00054

204040..204101

-

uaucacagugauuuuccuugu

953

bdo-mir-286

scaffold00054

204943..205010

-

ugacuagaccgaacacucgugcu

5017

bdo-mir-309

scaffold00054

205266..205336

-

ucacuggguaaaguuuguccu

1086

bdo-mir-5c

scaffold00054

206688..206749

-

uaucacagugauuuuccuugu

953

bdo-mir-12

scaffold00073

1266978..1267046

+

ugaguauuacaucagguacugg

1833

bdo-mir-304

scaffold00073

1266554..1266619

+

uaaucucaauuuguaacugugag

487

bdo-mir-283

scaffold00073

1264481..1264548

+

aaauaucagcugguaauucugg

339

bdo-mir-994

scaffold00147

463832..463903

-

uaaggaaauaguagccgugau

1180

bdo-mir-318

scaffold00147

463659..463730

-

ucacugggcuuuguuuaucuca

343

bdo-mir-305

scaffold03687

2585..2645

-

auuguacuucaucaggugcucugg

18881

bdo-mir-275

scaffold03687

2783..2848

-

ucagguaccugaaguagcgcgcg

1720