Fig. 1

Single Nucleotide Polymorphisms (SNP) in each of the Muguga Cocktail component T. parva stocks relative to the reference T. parva Muguga isolate. a) Number of base pairs in the reference T. parva Muguga genome assembly with no read coverage from each of the three isolates. SNPs cannot be identified in this fraction of the genome, respectively 0.55 % (45,837 bp), 0.29 % (24,439 bp) and 5.61 % (466,092 bp) of the genome, in the comparisons with Muguga clone 2, Serengeti-transformed and Kiambu5. b) Identified SNPs unique to, and shared among, Muguga clone 2, Kiambu5, and Serengeti-transformed isolates