Table 8 Conserved alternative splicing genes among five monocot plants
From: Genome-wide cataloging and analysis of alternatively spliced genes in cereal crops
O. sativa ssp indica | O. sativa ssp japonica | Z. mays | S. bicolor | B. distachyon | CDD/Pfam | Â | Â |
|---|---|---|---|---|---|---|---|
Osi19962 | Osj954 | Zm92934 | Sb6267 | Bd2565 | pfam03171 | 2OG-FeII_Oxy | 2OG-Fe(II) oxygenase superfamily |
Osi18787 | Osj44013 | Zm40020 | Sb12294 | Bd28385 | pfam00004 | AAA | ATPase family associated with various cellular |
Osi6875 | Osj22392 | Zm88316 | 45969421 | Bd7352 | pfam00248 | Aldo_ket_red | Aldo/keto reductase family |
Osi9356 | Osj41340 | Zm162 | Sb17314 | Bd6214 | pfam00248 | Aldo_ket_red | Aldo/keto reductase family |
CX100091 | Osj15328 | Zm35072 | Sb10885 | Bd29210 | pfam00439 | Bromodomain | Bromodomain |
Osi12568 | Osj24409 | Zm100060 | Sb8817 | Bd24009 | pfam05042 | Caleosin | Caleosin related protein |
CT843009 | Osj14649 | Zm32705 | Sb6709 | Bd10918 | pfam00571 | CBS | CBS domain |
Osi524 | CT828785.1 | Zm73067 | Sb4586 | Bd10523 | pfam04733 | Coatomer_E | Coatomer epsilon subunit |
Osi21096 | Osj16673 | FL103380 | 2.42E + 08 | Bd4031 | pfam07876 | Dabb | Stress responsive A/B Barrel Domain |
Osi8549 | Osj47391 | Zm69871 | Sb334 | Bd7166 | pfam05605 | Di19 | Drought induced 19 protein (Di19) |
CT833644.1 | CI258157 | Zm20082 | Sb10226 | Bd7036 | pfam05057 | DUF676 | Putative serine esterase (DUF676) |
Osi21136 | Osj16693 | Zm46142 | Sb13903 | Bd7810 | pfam05623 | DUF789 | Protein of unknown function (DUF789) |
Osi19974 | Osj14932 | Zm70017 | Sb10575 | Bd3731595 | pfam00676 | E1_dh | Dehydrogenase E1 component |
Osi1759 | Osj22934 | Zm35625 | Sb15873 | Bd7027 | pfam01370 | Epimerase | NAD dependent epimerase/dehydratase family |
CT842225 | Osj27697 | Zm91971 | Sb4930 | Bd268 | pfam00316 | FBPase | Fructose-1-6-bisphosphatase |
Osi20900 | Osj16392 | Zm58947 | Sb3303 | Bd7531597 | pfam00210 | Ferritin | Ferritin-like domain |
Osi339 | Osj20205 | Zm20714 | Sb12056 | Bd6374 | pfam00762 | Ferrochelatase | Ferrochelatase |
Osi11082 | Osj491 | Zm59942 | Sb3313 | Bd27405 | pfam00125 | Histone | Core histone H2A/H2B/H3/H4 |
Osi13655 | Osj36042 | Zm81325 | Sb15256 | Bd28446 | pfam00403 | HMA | Heavy-metal-associated domain |
Osi11360 | Osj36865 | Zm38497 | Sb20674 | Bd9583 | pfam00447 | HSF_DNA-bind | HSF-type DNA-binding |
Osi17520 | Osj35947 | Zm27347 | Sb9471 | Bd7833 | pfam01156 | IU_nuc_hydro | Inosine-uridine preferring nucleoside |
Osi13902 | Osj25885 | Zm23750 | Sb12436 | Bd28318 | pfam00013 | KH_1 | KH domain |
Osi11280 | Osj28328 | Zm35841 | Sb9907 | Bd13744 | cd00116 | LRR_RI | Leucine-rich repeats (LRRs) |
CT844279 | CB642464 | Zm3338 | Sb7337 | Bd28467 | pfam01717 | Meth_synt_2 | Cobalamin-independent synthase |
Osi1437 | Osj37916 | Zm4695 | Sb5119 | Bd7994 | pfam00635 | Motile_Sperm | MSP (Major sperm protein) domain |
Osi231 | Osj25397 | Zm37411 | Sb10332 | Bd28960 | pfam14360 | PAP2_C | PAP2 superfamily C-terminal |
Osi8815 | Osj32580 | Zm61468 | Sb11226 | Bd6619 | pfam01195 | Pept_tRNA_hydro | Peptidyl-tRNA hydrolase |
Osi16666 | Osj19199 | Zm104454 | Sb12015 | Bd16056 | pfam00450 | Peptidase_S10 | Serine carboxypeptidase |
Osi12736 | Osj14309 | Zm22618 | Sb7927 | Bd8683 | pfam00141 | peroxidase | Peroxidase |
Osi833 | Osj39350 | Zm92939 | Sb19533 | Bd5931597 | pfam00069 | Pkinase | Protein kinase domain |
Osi3301 | Osj17780 | Zm29726 | Sb14730 | Bd29285 | pfam00069 | Pkinase | Protein kinase domain |
Osi6061 | Osj15126 | Zm59883 | Sb673 | Bd15932 | PLN02756 | PLN02756 | S-methyl-5-thioribose kinase |
Osi6187 | Osj42201 | Zm39790 | Sb2138 | Bd8363 | pfam00348 | polyprenyl_synt | Polyprenyl synthetase |
Osi13092 | Osj21144 | Zm33939 | Sb5787 | Bd23758 | pfam14299 | PP2 | Phloem protein 2 |
Osi11891 | NM_001070568.2 | Zm87952 | Sb2001 | Bd2595 | pfam00854 | PTR2 | POT family |
Osi20788 | Osj19691 | Zm39384 | 30944654 | Bd10083 | pfam07992 | Pyr_redox_2 | Pyridine nucleotide-disulphide |
CT837906.1 | Osj7689 | Zm101865 | Sb5520 | Bd25885 | pfam00719 | Pyrophosphatase | Inorganic pyrophosphatase |
Osi21504 | Osj17274 | Zm6058 | Sb11340 | Bd21664 | pfam00072 | Response_reg | Response regulator receiver domain |
Osi15366 | Osj24220 | Zm5068 | Sb10671 | Bd23705 | pfam02453 | Reticulon | Reticulon |
Osi9029 | Osj47510 | Zm24118 | Sb11323 | Bd8231593 | pfam03214 | RGP | Reversibly glycosylated polypeptide |
Osi5643 | Osj25267 | Zm80771 | Sb227 | Bd11010 | pfam01246 | Ribosomal_L24e | Ribosomal protein L24e |
Osi8310 | Osj36859 | Zm101179 | Sb11303 | Bd6311 | pfam00076 | RRM_1 | RNA recognition motif |
Osi1456 | Osj43479 | Zm371 | Sb12579 | Bd15819 | pfam00076 | RRM_1 | RNA recognition motif |
Osi773 | Osj43052 | Zm24001 | Sb2305 | Bd20070 | pfam00464 | SHMT | Serine hydroxymethyltransferase |
Osi9812 | Osj14203 | Zm39491 | 2.42E + 08 | Bd28258 | pfam01406 | tRNA-synt_1e | tRNA synthetases class I (C) catalytic |
Osi9653 | Osj44577 | Zm33457 | Sb5144 | Bd6360 | pfam00443 | UCH | Ubiquitin carboxyl-terminal hydrolase |
Osi2251 | Osj35805 | Zm98577 | 2.42E + 08 | Bd20683 | pfam12076 | Wax2_C | WAX2 C-terminal domain |
Osi15508 | Osj14495 | Zm95 | Sb10474 | Bd4536 | pfam05495 | zf-CHY | CHY zinc finger |
Osi21052 | Osj4519 | Zm39479 | Sb9831 | Bd24331 | No Pfam predicted | Â | |
Osi8778 | Osj195 | Zm100142 | Sb1070 | Bd2265 | No Pfam predicted | Â | |
Osi20728 | Osj16408 | Zm34294 | 57806619 | Bd19455 | No Pfam predicted | Â | |
Osi17233 | Osj20996 | Zm100171 | Sb1504 | Bd16477 | No Pfam predicted | Â | |
CT830510.1 | Osj3010 | Zm96019 | Sb2210 | Bd12504 | No Pfam predicted | Â | |