Table 2 Genes in the QTL sequences annotated in silico with the gene ontology term “defense response”

cbr1_scaffold114-gene-0.3-mRNA-1

Transcription factor tga1

Transcription factor TGA1 (Vitis vinifera)

cbr1_scaffold134-gene-0.0-mRNA-1

cc-nbs-lrr resistance protein

Putative disease resistance protein RGA3 (Vitis vinifera)

cbr1_scaffold16-gene-0.12-mRNA-1

rna recognition motif-containing protein

PREDICTED: DAZ-associated protein 1-like (Vitis vinifera)

cbr1_scaffold17-gene-0.29-mRNA-1

Beta-hydroxyacyl-acp dehydratase

Predicted protein (Populus trichocarpa)

cbr1_scaffold28-gene-0.12-mRNA-1

Transcription factor tga1

TGA transcription factor 1 (Populus tremula x Populus alba)

cbr1_scaffold32-gene-0.28-mRNA-1

14-3-3-like protein gf14 lambda

Hypothetical protein ARALYDRAFT_496774 [Arabidopsis lyrata subsp. lyrata)

cbr1_scaffold4-gene-0.38-mRNA-1

Multicatalytic endopeptidase complex

Proteasome subunit alpha type-7 (Vitis vinifera)

cbr1_scaffold61-gene-0.11-mRNA-1

Disease resistance protein at4g27190-like

PREDICTED: disease resistance protein At4g27190-like (Vitis vinifera)

cbr2_scaffold29-gene-0.6-mRNA-1

cc-nbs-lrr resistance protein

cc-nbs-lrr resistance protein (Populus trichocarpa)

cbr2_scaffold34-gene-0.3-mRNA-1

Feronia receptor-like kinase

Serine/threonine-protein kinase PBS1, putative (Ricinus communis)

cbr2_scaffold3-gene-0.42-mRNA-1

Protein

PREDICTED: MLO protein homolog 1-like (Glycine max)

cbr2_scaffold5-gene-0.9-mRNA-1

Transferring glycosyl

Transferase, transferring glycosyl groups, putative (Ricinus communis)

cbr3_scaffold1-gene-1.1-mRNA-1

Histone-lysine n-methyltransferase ashh2-like

PREDICTED: uncharacterized protein LOC100245350 (Vitis vinifera)

cbr3_scaffold1-gene-1.19-mRNA-1

Set domain protein

PREDICTED: uncharacterized protein LOC100245350 (Vitis vinifera)

cbr3_scaffold28-gene-0.8-mRNA-1

Cysteine proteinase rd19a

Cysteine proteinase RD19a (Arabidopsis thaliana)