Table 2 De novo assembly statistics
Input | Assembly software | Number of transcripts | Number of bases assembled | N50 (bp) | Number of singleton reads | Median contig length (bp) | Mean contig length (bp) | Maximum contig length (bp) |
|---|---|---|---|---|---|---|---|---|
454 reads (two libraries merged) | CLC Genomics Workbench | 18 794 | 14 257 486 | 897 | 94 753 | 586 | 759 | 11Â 217 |
Illumina reads (six libraries merged) | Trinity | 196 766 | 187 289 921 | 1 828 | NA | 447 | 952 | 30 278 |