Table 1 Summary of sequencing and assembly statistics
Total sequenced reads | 277,105,235 |
Trimmomatic filtered reads | 262,236,803 |
Total assembled bases (bp) | 69,451,297 |
Trinity assembled transcripts | 55,393 |
Corset clusters | 29,292 |
Median transcript lenght (bp) | 645 |
Average transcript lenght (bp) | 1253.79 |
Transcript N50 (bp) | 2376 |
Shortest transcript lenght (bp) | 201 |
Longest transcript lenght (bp) | 25,399 |
Trinity transcripts > 1Kb | 21,529 |
Trinity transcripts > 2Kb | 11,192 |