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Table 1 Up-regulated or down-regulated expression of 24 sex differentiation-related genes in the germ cell-depleted gonads

From: Complete depletion of primordial germ cells in an All-female fish leads to Sex-biased gene expression alteration and sterile All-male occurrence

Hit sequence ID

Species

Gene name

Gene description

Gene

Up or down-regulation

Exp.

Obs.

EU136185.1

squalius pyrenaicus

amh

anti-Mullerian hormone

Unigene7325

T

+++

AY090897.1

goldfish

ar

androgen receptor

Cl14013.c2

T

+++

NM_001080204.1

black porgy

cyp11b

11-beta-hydroxylase

Unigene57084

T

+++

ACT79291.1

squalius alburnoides

dax1

nuclear receptor subfamily 0 group B member 1

Unigene6035

T

+++

JQ413415.1

zebrafish

dmrt1

doublesex- and mab-3 related transcription factor 1

Cl355.c2

T

+++

NM_001005779.2

zebrafish

dmrt3

doublesex and mab-3 related transcription factor 3

Unigene44639

T

+++

NM_001114668.1

zebrafish

gsdf

gonadal soma derived factor

Cl9466.c1

T

+++

AAF43283.1

zebrafish

nr5a1a

nuclear receptor subfamily 5, group A, member 1a

Cl40.c1

T

+++

BC078289.1

zebrafish

pdgfaa

platelet derived growth factor alpha a

Cl1048.c1

T

+++

NM_001076757.1

zebrafish

pdgfab

platelet derived growth factor alpha b

Cl14024.c1

T

+++

Z32814.1

zebrafish

pdgfra

platelet-derived growth factor receptor, alpha

Cl11648.c2

T

+++

NP_001070225.1

zebrafish

pdgfrb

platelet-derived growth factor receptor beta

Unigene9549

T

+++

XM_860152.2

loach

sox8

SRY-related HMG-box 8

Unigene61836

T

+++

AAG09814.1

zebrafish

sox9a

SRY-related HMG-box 9

Cl11561.c1

T

+++

AY956415.1

goldfish

sox9b

SRY-related HMG-box 9

Unigene11888

T

+++

JQ217143.1

loach

sox10

SRY-related HMG-box 10

Cl19883.c1

T

+++

DQ886664.1

zebrafish

gata4

GATA-binding protein 4

Cl12384.c1

B

+++

BC162638.1

zebrafish

wt1a

wilms tumor suppressor 1a

Cl4953.c1

B

+++

BC056276.1

zebrafish

ctnnb1

catenin β-1

Unigene4098

O

---

AF020704.1

goldfish

cyp19a1a

aromatase a

Unigene14479

O

-

AB531497.1

loach

foxl2

forkhead box transcription factor L2

Cl17424.c1

O

-

NM_001039621.1

zebrafish

fst

Follistatin

Unigene1876

O

---

AAI24452.1

zebrafish

srd5a1

3-oxo-5-alpha-steroid 4-dehydrogenase 1

Cl17085.c2

O

---

NM_001044939.1

zebrafish

srd5a3

3-oxo-5-alpha-steroid 4-dehydrogenase 3

Cl18471.c2

O

---

  1. Exp.: The expected over-expression in testis (T), bipotential gonad (B) or ovary (O) of other vertebrate species; Obs.: The observed up-regulated or down-regulated expression in germ cell-depleted gonads compared with WT gonads. “+++”: Significantly up-regulated expression; “---”: Significantly down-regulated expression; “-”: mildly down-regulated expression