Primer name | Platform | Library design | Variable region | Sequence |
---|---|---|---|---|
454_27YMF | 454 | F | V1-V3 | CCATCTCATCCCTGCGTGTCTCCGACTCAGxxxxxxxxxx AGAGTTTGATYMTGGCTCAG |
454_515R | Â | Â | Â | CCTATCCCCTGTGTGCCTTGGCAGTCTCAGTTACCGCGGCKGCTGNCAC |
454_F341 | 454 | F | V3-V4 | CCATCTCATCCCTGCGTGTCTCCGACTCAGxxxxxxxxxxCCTAYGGGRBGCASCAG |
454_816R1 | Â | Â | Â | CCTATCCCCTGTGTGCCTTGGCAGTCTCAGGGACTACHVGGGTWTCTAAT |
454_F515 | 454 | F | V4-V5 | CCATCTCATCCCTGCGTGTCTCCGACTCAGxxxxxxxxxxGTGNCAGCMGCCGCGGTAA |
454_926R | Â | Â | Â | CCTATCCCCTGTGTGCCTTGGCAGTCTCAGCCGYCAATTYMTTTRAGTTT |
454_F515 | 454 | F | V4-V6 | CCATCTCATCCCTGCGTGTCTCCGACTCAGxxxxxxxxxxGTGNCAGCMGCCGCGGTAA |
454_1061R | Â | Â | Â | CCTATCCCCTGTGTGCCTTGGCAGTCTCAGCRRCACGAGCTGACGAC |
454_F515 | 454 | F | V4 | CCATCTCATCCCTGCGTGTCTCCGACTCAGxxxxxxxxxxGTGNCAGCMGCCGCGGTAA |
454_816R1 | Â | Â | Â | CCTATCCCCTGTGTGCCTTGGCAGTCTCAGGGACTACHVGGGTWTCTAAT |
454_F515A | 454 | F | V4A | CCATCTCATCCCTGCGTGTCTCCGACTCAGxxxxxxxxxxGTGBCAGCMGCCGCGGTAA |
454_805RA | Â | Â | Â | CCTATCCCCTGTGTGCCTTGGCAGTCTCAGGACTACHVGGGTATCTAATCC |
454_F787 | 454 | F | V5-V9 | CCATCTCATCCCTGCGTGTCTCCGACTCAGxxxxxxxxxxATTAGATACCCNGGTAG |
454_1492R | Â | Â | Â | CCTATCCCCTGTGTGCCTTGGCAGTCTCAGTACGGYTACCTTGTTAYGACTT |
1Round515For | MS | DI | V4 | CTACACTCTTTCCCTACACGACGCTCTTCCGATCTNNNNNGTGCCAGCMGCCGCGGTAA |
1Round806Rev | Â | Â | Â | GTGACTGGAGTTCAGACGTGTGCTCTTCCGATCTGGACTACHVGGGTWTCTAAT |
1RounN515F | MS | DI | V4 | CTACACTCTTTCCCTACACGACGCTCTTCCGATCTGTGCCAGCMGCCGCGGTAA |
1Round806R | Â | Â | Â | GTGACTGGAGTTCAGACGTGTGCTCTTCCGATCTGGACTACHVGGGTWTCTAAT |
1Round341For | MS | DI | V4 | CTACACTCTTTCCCTACACGACGCTCTTCCGATCTCCTAYGGGRBGCASCAG |
1Round805RARev | Â | Â | Â | GTGACTGGAGTTCAGACGTGTGCTCTTCCGATCTGACTACHVGGGTATCTAATCC |
1Round515AFor | MS | DI | V4 | CTACACTCTTTCCCTACACGACGCTCTTCCGATCTGTGBCAGCMGCCGCGGTAA |
1Round805RARev | Â | Â | Â | GTGACTGGAGTTCAGACGTGTGCTCTTCCGATCTGACTACHVGGGTATCTAATCC |
DI_N5XXFor | MS | DI | V4 | AATGATACGGCGACCACCGAGATCTACACxxxxxxxxACACTCTTTCCCTACACGACG |
DI_N7xxRev | Â | Â | Â | CAAGCAGAAGACGGCATACGAGATxxxxxxxxGTGACTGGAGTTCAGACGTGTGCTCTTCCGATCT |
FG515for | MS | F | V4 | AATGATACGGCGACCACCGAGATCTACACTATGGTAATTGTGTGCCAGCMGCCGCGGTAA |
FG8xxrev | Â | Â | Â | CAAGCAGAAGACGGCATACGAGATxxxxxxxxxxAGTCAGTCAGCCGGACTACHVGGGTWTAAT |
Read 1 Seq Primer | MS | F | V4 | TATGGTAATTGTGTGCCAGCMGCCGCGGTAA |
Read 2 Seq Primer | MS | F | V4 | AGTCAGTCAGCCGGACTACHVGGGTWTCTAAT |
Index Seq Primer | MS | F | V4 | ATTAGAWACCCBDGTAGTCCGGCTGACTGACT |
454_F341 | IT | F | V3-V4 | CCATCTCATCCCTGCGTGTCTCCGACTCAGCxxxxxxxxxxCCTAYGGGRBGCASCAG |
TtP1_Kn805rev | Â | Â | Â | CCTCTCTATGGGCAGTCGGTGATGGACTACHVGGGTWTCTAAT |
454_F515A | IT | F | V4 | CCATCTCATCCCTGCGTGTCTCCGACTCAGxxxxxxxxxxGTGBCAGCMGCCGCGGTAA |
TtP1_Kn805rev | Â | Â | Â | CCTCTCTATGGGCAGTCGGTGATGGACTACHVGGGTATCTAATCC |
454_F515 | IT | F | V4 | CCATCTCATCCCTGCGTGTCTCCGACTCAGACATACGCGTGTGNCAGCMGCCGCGGTAA |
TtP1_Kn806rev | Â | Â | Â | CCTCTCTATGGGCAGTCGGTGATGGGACTACHVGGGTWTCTAAT |
PBv1F | PB | LA | V1-V9 | ggtagxxxxxxxxxxxxxxxxAGAGTTTGATYMTGGCTCAG |
PBv9R | Â | Â | Â | ccatcxxxxxxxxxxxxxxxxTACGGYTACCTTGTTAYGACTT |