Skip to main content
Fig. 1 | BMC Genomics

Fig. 1

From: Removal of redundant contigs from de novo RNA-Seq assemblies via homology search improves accurate detection of differentially expressed genes

Fig. 1

Scatter plots of log2-fold changes in gene dataset vs. various reference sequences. Values for the log2-fold changes in genes were calculated accurately, but erroneous contigs were included. a Scatter plot of log2-fold changes in the gene dataset vs. primary assembled contigs (raw contigs). Scatter plot of log2-fold changes in gene dataset vs. various contig groups after removing redundant contigs by (b) Longest method, (c) Clustered method, (d) Annotation using the gene dataset, (e) Annotation using combined plant protein database (Plant DB), (f) and non-duplicated Plant DB (PlantClust50 DB). Panels b–f overlay data points of panel a, indicated by black dots

Back to article page

BMC Genomics

ISSN: 1471-2164

Contact us