Fig. 3

Analysis of representative transcripts spanning two or three Chinese Spring (CS) loci. a The transcript 2BS_5155291.1.1 and the three CS loci (Traes_2BS_D46E40C29, Traes_2BS_033FD1621 and Traes_2BS_00DF01F06) it covered. These loci are located on the CS contig 2BS_5155291, and the transcripts annotated for the three loci by the draft genome sequence are boxed in green. The bottom panel shows B. distachyon genomic region orthologous to 2BS_5155291. A single locus (Bradi1g21372.1) and a corresponding transcript (boxed in purple) are annotated for this B. distachyon genomic region (http://www.plantgdb.org/BdGDB/). b The PacBio transcript 1AL_3888283.1.2 and the two CS loci (Traes_1AL_2D4B01C64 and Traes_1AL_6275047AA) it covered. The two loci reside on the CS contig 1AL_3888283, and the representative transcripts annotated for them by the draft genome sequence are boxed in green. The bottom panel is the rice genomic region orthologous to 1AL_3888283. A single locus (Os05g0345400.02) and a corresponding transcript (boxed in purple) are annotated for this rice genomic region (http://www.plantgdb.org/OsGDB/). The transcripts in (a and b) are all shown as SMMs with exon (filled box) and intron (line between two neighboring exons) depicted. The diagrams are not scaled