SMRT sequencing of the Campylobacter coli BfR-CA-9557 genome sequence reveals unique methylation motifs

BMC Genomics

Table 1 Positions of poly-G tracts in the BFR-CA-9557 genome

Poly G on forward strand			Pos. rel. to		ORF location
Position	Length	RAST annotation of closest ORF	ATG	STOP	Start	Stop	Strand
46933	9	hypothetical protein	−52	−2292	46985	49225	+
258726	10	FIG 00470070: hypothetical protein	−15	−1924	258741	260650	+
689956	10	UDP-N-acetylmuramoylalanine--D-glutamate ligase (EC 6.3.2.9)	−6	−1232	691179	689971	-
851085	10	FIG 00470965: hypothetical protein	556	−671	850529	851756	+
1562460	10	Putative transferase	−48	−590	1562508	1563050	+
1565336	9	FIG 00469667: hypothetical protein	251	−423	1565085	1565759	+
1575332	10	Motility accessory factor	167	−1780	1575165	1577112	+
1645063	9	Ferrous iron transport protein B	1576	−269	1643487	1645332	+

Poly-G/C tracts were searched in the BFR-CA-9557 genome using regular expression describing at least 8 consecutive G/C. The first two columns denote the genome location and length of the expression found. Column 3 shows the RAST annotation of the ORF closest to the homopolymeric stretch. Column 4 and 5 represent the relative position of the stretch to the ORF’s start (4) and Stop codon (5), with negative numbers representing upstream locations. Columns 6 to 8 denote the location and orientation of the ORF

ISSN: 1471-2164