Gene | Putative function of encoded protein product | COG | Log2 fold change | Sequence motif (5’-3’)a | Identity (%) | Distance to translation start site (nt) |
---|---|---|---|---|---|---|
Rt617_78 | Amino acid ABC transporter substrate-binding protein | E | 5.097 | TGAAATCCATATCGACACTTCT | 72.2 | 0 |
Rt620_77 | Urea ABC transporter ATP-binding protein | E | 3.502 | CGGCTTCAAGGCGCTGAATTCG | 66.7 | 61 |
Rt619_162 | ABC-type dipeptide/oligopeptide transport system, permease | EP | −4.011 | CAGAATCCGGCGGTGC-TTCCG | 68.2 | −153 |
Rt619_164 | Peptide ABC transporter ATPase | EP | −4.438 | CGCATTCTTCTCCTCTATATCG | 66.7 | −281 |
Rt648_25 | LacI family transcriptional regulator | G | 3.147 | CGGCGGATAATCCTTGATCTCG | 66.7 | −176 |
Rt794_16 | ABC transporter ATP-binding protein | G | 2.968 | GCGCTTCGTGGCGTGGATTTCG | 66.7 | 56 |
Rt794_99 | Sugar ABC transporter | G | 2.053 | CGGATTCCAGTAGGGATTTTCG | 72.2 | 85 |
Rt643_15 | Sugar ABC transporter substrate-binding protein | G | −3.744 | CGGGGTCAGCAACTGCATTTCG | 72.2 | −83 |
Rt620_14 | Glycerol 3-phosphate ABC transporter | G | 2.133 | CGAAATTTCTCTAAATATTTCC | 66.7 | −174 |
Rt657_260 | Cell division protein FtsK | D | −3.211 | CGGCGTCGAGATCTCGACATCG | 66.7 | −216 |
Rt634_26 | Flagellar biosynthesis repressor FlbT | N | −3.247 | CGCAAGGTCGCGCTGGAATTCC | 66.7 | 74 |
Rt634_27 | Flagellar basal body rod modification protein FlgD | N | −3.391 | CAGAAGGCAACGCTGAATTACG | 66.7 | 65 |
Rt634_13 | Flagellin B | N | −4.601 | TCCGATCTCGATTTAGCTTTCT | 66.7 | −170 |
Rt634_5 | Flagellar basal body P-ring biosynthesis protein FlgA | N | −3.438 | GGAAATCACCGAGCTGATCTCG | 59.1 | −99 |
Rt628_11 | Flagellar motor switch protein FliN | NU | −4.579 | CCGGCTGCGGGCATGGATTTCG | 66.7 | −13 |
Rt761_94 | Methyl-accepting chemotaxis protein | NT | −3.966 | CGCAAACGCAGTGTGTATTTGA | 54.5 | −124 |
Rt628_20 | Chemotaxis protein CheD | NT | −2.353 | CGAATTGGAAGATTGGCTGTCG | 66.7 | 145 |
Rt792_47 | Chemotaxis protein | NT | −2.587 | CGGAATGCAGCTATCCATTCCC | 66.7 | −36 |
Rt647_8 | Chemotaxis protein | NT | −3.651 | TAAATTCTACGCCAAGATCGCC | 66.7 | 127 |
Rt628_24 | Chemotaxis protein CheW | NT | −3.050 | CGGAGTCCAGCCCGGATTTCG | 72.7 | 98 |
Rt628_25 | Chemotaxis protein CheA | NT | −2.793 | CGGAGTCCAGCCCCGGATTTCG | 72.7 | 98 |
Rt792_70 | Chemotaxis protein | NT | −3.025 | CGGATGACATCAGAGGATTTCG | 72.2 | −298 |
Rt628_22 | Chemotaxis protein CheB | NT | −3.030 | CGGCGTCTATGAATGGGTGGAG | 66.7 | −40 |
Rt620_4 | Glycosyl transferase | M | 5.444 | CGAATACCAAAGCCTGATTTCG | 66.7 | −76 |
Rt620_5 | Polysaccharide biosynthesis protein | M | 5.090 | CTGGCGCGACTGCTCGATTTCG | 66.7 | 59 |
Rt794_35 | Polysaccharide biosynthesis protein | M | 2.433 | CGGCATCGGCCGGTAGATGACG | 66.7 | −191 |
Rt768_57 | Peptidoglycan hydrolase | M | −2.657 | CCGCATCGGCACGATGATTTCG | 66.7 | −243 |
Rt679_3 | Glycosyl transferase | M | −3.806 | CCGATTCACTATCTCGATCTCG | 66.7 | −137 |
Rt621_6 | UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase | M | −2.028 | CGAAATCCGCTGCGAGATATAA | 66.7 | 130 |
Rt623_92 | Glycosyl transferase | M | −2.450 | TGAAGTCTTGGGACTGACATCA | 66.7 | −106 |
Rt780_45 | Polysaccharide biosynthesis protein | M | 7.890 | TTGAAACGA-GCCTGGATTACG | 63.6 | 291 |
Rt627_76 | Polysaccharide biosynthesis protein GelA | M | 2.218 | CGGATCGAAGCG-TG-AATTCG | 63.6 | 22 |
Rt620_62 | Exopolysaccharide biosynthesis protein PssA | M | −1.170 | CGAAATGCTGTTGTTTAGTTCC | 54.5 | 11 |
Rt772_12 | Glycosyl transferase PssC | M | −1.451 | CTGAAGCTCCGGGGCGAAGCTCG | 63.6 | −125 |
Rt780_150 | Signal peptide protein | H | 3.925 | ATGCATCAAATACTGCATGTCG | 66.7 | −239 |
Rt622_32 | Ubiquinol oxidase subunit II | C | −6.942 | CGAAAAATCCTTCTTGATTTCA | 66.7 | −231 |
Rt620_122 | Iron transporter | P | −2.510 | CGGAAGGCAGCGATGGTGTTCT | 66.7 | 73 |
Rt772_17 | PrsD component of type I secretion system | MU | 2.252 | CTGCAGCTACGGGTCCATCAAG | 59.1 | −50 |
Rt646_16 | Acyl-homoserine-lactone synthase (RaiI) | T | 6.049 | AGCAATCTATGAATGGAATCGT | 66.7 | 64 |
Rt628_39 | Histidine kinase (PhoR) | T | 3.583 | GGTAATCTAGCACCGTAATTTG | 66.7 | −200 |
Rt620_2 | Crp/Fnr family transcriptional regulator | T | 7.049 | TTTCAACTAAATGTAGACTTGA | 66.7 | −129 |
Rt628_38 | Chemotaxis protein CheY | T | 4.010 | GAGGATCTCGCCGGGGATTTCC | 66.7 | −299 |
Rt628_26 | Chemotaxis protein CheY | T | −3.129 | CGGAACCAATGTCAGCATTGAG | 66.7 | 81 |
Rt782_109 | Nitrogen regulatory protein P-II | TE | 3.152 | CGGTATTCAGGGGCTGAC—-CG | 63.6 | 80 |
Rt648_50 | PhoB family transcriptional regulator | TK | 3.900 | GGTCGTCAAGGTGTTGAACCAG | 50.0 | −167 |
Rt783_97 | Transcriptional regulator | K | 4.442 | CGGTGTCGGCCATCGGCTTTCG | 66.7 | −224 |
Rt794_73 | TetR family transcriptional regulator | K | 3.385 | CGTCATCTCGATGACCATTTCG | 66.7 | 49 |
Rt764_77 | TetR family transcriptional regulator | K | 2.774 | TGAAATCTCCGCAGCCGTTCCA | 66.7 | 40 |
Rt780_87 | AraC family transcriptional regulator | K | 2.340 | GCAAATCAATCGATCGATCTCG | 66.7 | 117 |
Rt792_156 | LysR family transcriptional regulator | K | 2.246 | CAGGATCTGGAAGCCGATATCG | 66.7 | 131 |
Rt641_47 | LysR family transcriptional regulator | K | 2.237 | CGGAAGGTGTTTTCGGATGCCG | 66.7 | −267 |
Rt636_12 | GntR family transcriptional regulator | K | 2.044 | CCGAAACTATCAGCGCGCTTCG | 66.7 | −45 |
Rt764_77 | TetR family transcriptional regulator | K | 2.774 | TGAAATCTCCGCAGCCGTTCCA | 66.7 | 40 |
Rt634_21 | Transcriptional regulator | K | −1.776 | TCAAATCGCTACCCAGATCTTA | 66.7 | −126 |
Rt780_42 | Membrane protein | S | 5.363 | CGATATTTAATGATGGATACCA | 66.7 | −64 |
 |  | RosR-box sequence |  | CGGAATCTAGGGGTGGATTTCG | - | - |