Effect of roughage on rumen microbiota composition in the efficient feed converter and sturdy Indian Jaffrabadi buffalo (Bubalus bubalis)

Nathani, Neelam M.; Patel, Amrutlal K.; Mootapally, Chandra Shekar; Reddy, Bhaskar; Shah, Shailesh V.; Lunagaria, Pravin M.; Kothari, Ramesh K.; Joshi, Chaitanya G.

doi:10.1186/s12864-015-2340-4

Table 1 Sequence details of 48 metagenomic samples

From: Effect of roughage on rumen microbiota composition in the efficient feed converter and sturdy Indian Jaffrabadi buffalo (Bubalus bubalis)

Sample ID	MG-RAST Accession No.	Initial Reads	QC Passed Reads	rRNA Reads	Reads with predicted CDS	Post QC bp Count	α Diversity
J1GL1	4604206.3	1,424,078	1,173,142	1,066	1,005,811	229 MB	278.47
J2GL2	4604108.3	928,450	742,323	638	619,505	127 MB	322.03
J1GL3	4604092.3	512,016	423,203	390	368,554	77 MB	330.86
J1GL4	4571939.3	412,187	336,762	1,541	283,379	52 MB	422.45
J1GS1	4604096.3	498,599	412,088	535	353,673	74 MB	305.85
J1GS2	4604097.3	549,260	465,291	815	414,950	93 MB	226.21
J1GS3	4604098.3	677,970	562,220	820	494,011	111 MB	267.64
J1GS4	4604100.3	703,240	571,552	624	490,396	105 mb	293.22
J1DL1	4575792.3	949,870	636,956	5,020	516,485	106 MB	236.28
J1DL2	4575793.3	774,918	559,938	4,449	454,942	96 MB	215
J1DL3	4575794.3	918,259	673,358	5,722	546,797	115 MB	192.89
J1DL4	4575795.3	845,121	589,649	5,080	480,019	98 MB	238.12
J1DS1	4575901.3	708,081	451,811	2,716	355,948	72 MB	295.41
J1DS2	4575796.3	951,833	680,197	4,127	549,267	115 MB	309.42
J1DS3	4575797.3	641,328	463,939	2,576	386,658	79 MB	265.89
J1DS4	4575798.3	700,602	505,592	3,066	414,480	87 MB	271.48
J2GL1	4575799.3	505,950	311,420	1,779	250,659	47 MB	246.79
J2GL2	4575800.3	622,310	363,544	2,924	283,594	52 MB	272.56
J2GL3	4575801.3	1,029,049	580,314	3,600	449,782	84 MB	216.72
J2GL4	4575802.3	752,725	428,414	2,834	330,438	62 MB	249.28
J2GS1	4575803.3	632,004	364,726	2,382	287,106	53 MB	198.09
J2GS2	4575804.3	723,939	405,675	2,573	315,656	59 MB	187.26
J2GS3	4575805.3	672,315	386,374	2,586	302,656	56 MB	188.61
J2GS4	4575806.3	625,425	359,933	2,566	278,956	53 MB	179.03
J2DL1	4575807.3	1,051,264	753,416	10,146	631,726	148 MB	282.88
J2DL2	4603329.3	713,045	597,496	678	528,928	145 MB	343
J2DL3	4575809.3	986,698	722,822	9,061	609,515	144 MB	210.54
J2DL4	4575810.3	850,672	603,721	8,710	504,032	116 MB	320.17
J2DS1	4575811.3	840,552	588,345	9,514	473,773	108 MB	257.68
J2DS2	4575812.3	477,350	295,723	5,475	231,448	48 MB	314.28
J2DS3	4575813.3	615,868	389,436	7,503	302,586	62 MB	330.97
J2DS4	4618633.3	659,273	522,750	506	450,497	111 MB	347.89
J3GL1	4604101.3	652,383	552,242	603	490,170	55 MB	324.08
J3GL2	4575822.3	1,110,839	796,087	8,867	621,768	140 MB	302.69
J3GL3	4575823.3	635,610	456,220	3,733	376,693	82 MB	261.99
J3GL4	4575824.3	730,149	533,490	3,910	439,428	97 MB	296.69
J3GS1	4575825.3	626,583	392,629	3,997	313,489	66 MB	244.66
J3GS2	4575826.3	669,967	456,754	3,937	375,022	81 MB	239.68
J3GS3	4575902.3	774,116	497,294	5,187	391,485	85 MB	276.19
J3GS4	4575897.3	715,753	470,224	4,152	385,107	83 MB	257.78
J3DL1	4575814.3	886,334	609,043	6,891	504,556	107 MB	332.67
J3DL2	4575815.3	703,305	512,015	5,212	437,145	90 MB	399.25
J3DL3	4575816.3	703,848	511,130	5,656	432,451	89 MB	386.36
J3DL4	4575817.3	1,072,487	735,953	7,679	607,004	124 MB	373.05
J3DS1	4604102.3	3,651,797	2,657,826	2,473	1,941,947	530 MB	217.07
J3DS2	4575818.3	503,637	309,631	4,059	236,682	47 MB	171.43
J3DS3	4575819.3	512,538	334,694	4,934	266,702	54 MB	218.68
J3DS4	4575820.3	762,281	443,019	8,521	328,072	60 MB	318.59

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