From: CANEapp: a user-friendly application for automated next generation transcriptomic data analysis
Gene Name | Cuffdiff | edgeR_GML | edgeR_et | DESeq2 | QRT-PCR |
---|---|---|---|---|---|
Alzheimer’s disease dataset | |||||
 SERPINE1 | 1.41 | 1.71 | 1.54 | 0.98 | 1.66 |
 TAC1 | −1.77 | −1.65 | −1.85 | −1.56 | −0.42 |
 ID2 | 0.98 | 1.07 | 0.88 | −0.73 | 1.17 |
 GRM2 | 0.86 | 0.98 | 0.78 | 0.63 | 0.44 |
 LINC01314 | −0.25 | −1.19 | −1.38 | −1.05 | −0.50 |
 RP11-87E22.2 | 3.63 | 2.01 | 1.85 | 1.31 | 2.30 |
Mouse cortex dataset | |||||
 Vax1 | −2.12 | −2.02 | −1.74 | −1.71 | −3.18 |
 Caly | 1.93 | 1.79 | 2.08 | 2.09 | 2.10 |
 Igf2bp1 | −9.40 | −8.72 | −8.45 | −8.16 | −5.61 |
 Draxin | −5.98 | −5.26 | −4.98 | −4.94 | −6.80 |
 Nrp1 | −2.17 | −2.22 | −1.94 | −1.92 | −2.46 |
 Ttr | 11.04 | 11.18 | 11.46 | 11.28 | 11.63 |
 Mobp | 12.44 | 12.08 | 12.36 | 12.24 | 12.69 |
 Wipf1 | 2.22 | 1.74 | 2.02 | 2.03 | 1.71 |
Rat liver dataset | |||||
 Bax-AFL | 1.78 | 1.86 | 1.75 | 1.96 | 2.62 |
 Cdkn1a-AFL | 4.19 | 4.28 | 3.30 | 8.00 | 23.50 |
 Myc-AFL | 0.97 | 1.03 | 0.82 | 0.99 | 2.10 |
 Met-AFL | −1.02 | −0.94 | −0.88 | −0.89 | −1.90 |
 Bax-NIT | 1.62 | 1.22 | 1.19 | 1.25 | 1.98 |
 Cdkn1a-NIT | 3.22 | 2.82 | 2.56 | 3.05 | 8.07 |
 Figf-NIT | 4.18 | 3.76 | 3.51 | 3.72 | 10.27 |
 Fzd4-NIT | −0.30 | −0.70 | −0.69 | −0.73 | −2.07 |