Table 2 Key differentially expressed genes in the endosperm under ABA and H2O2 treatments
Genes | Functional classes | Fold-change | ||
|---|---|---|---|---|
BINs | subBINs | ABA vs CK | H2O2 vs CK | |
CK161429 | Metabolic pathways (assigned genes: 57) | PS. lightreaction. ATP synthase | 2.59 | 2.14 |
BJ247599 | major CHO metabolism. degradation. sucrose.invertases. cell wall | 0.31 | 0.41 | |
CD869165 | major CHO metabolism. degradation. sucrose.Susy | 0.44 | 0.4 | |
CA639484 | glycolysis. TPI | 0.19 | 0.3 | |
CA605311 | fermentation. ADH | 0.36 | 0.33 | |
CD868238 | fermentation. ADH | 0.27 | 0.3 | |
BQ166030 | fermentation. ADH | 0.29 | 0.32 | |
CA681784 | fermentation. aldehyde dehydrogenase | 2.37 | 2.16 | |
CD891243 | fermentation. aldehyde dehydrogenase | 2.67 | 4.36 | |
CA720946 | TCA / org. transformation. TCA.CS | 2.21 | 2.44 | |
CK198230 | cell wall. precursor synthesis. phosphomannomutase | 0.5 | 0.49 | |
BJ234908 | cell wall. precursor synthesis. MUR4 | 2.02 | 2.23 | |
CD452786 | cell wall. cell wall proteins. AGPs | 0.26 | 0.49 | |
CA611920 | cell wall. modification | 0.42 | 0.36 | |
CA638337 | cell wall. modification | 0.45 | 0.45 | |
CA644687 | cell wall. modification | 0.43 | 0.47 | |
BJ222865 | lipid metabolism. Phospholipid synthesis. choline-phosphate cytidylyltransferase | 2.23 | 2.2 | |
CA720390 | lipid metabolism. Phospholipid synthesis. cyclopropane-fatty-acyl-phospholipid synthase | 3.08 | 0.51 | |
CA610745 | lipid metabolism. “exotics” (steroids, squaleneetc). sphingolipids | 1.88 | 2.57 | |
BJ297605 | N-metabolism. ammonia metabolism. glutamine synthase | 2.04 | 1.57 | |
BE443630 | amino acid metabolism. synthesis.central amino acid metabolism. GABA. GABA transaminase | 4.8 | 2.61 | |
BQ280449 | amino acid metabolism. Synthesis.central amino acid metabolism. GABA. GABA transaminase | 3.75 | 2.02 | |
BE585584 | amino acid metabolism. synthesis.central amino acid metabolism. GABA. GABA transaminase | 4.09 | 2.28 | |
CD892913 | amino acid metabolism.synthesis.central amino acid metabolism.GABA.Glutamate decarboxylase | 0.2 | 0.48 | |
BT009245 | amino acid metabolism.synthesis.aspartate family.asparagine | 3.61 | 2.26 | |
BJ243273 | amino acid metabolism.degradation.aromatic aa.tyrosine | 2.56 | 2.7 | |
CD935642 | amino acid metabolism.degradation.aspartate family.methionine.methionine gamma-lyase | 4.19 | 2.82 | |
CD492002 | secondary metabolism.wax | 0.23 | 0.34 | |
CA599972 | secondary metabolism.isoprenoids.mevalonate pathway.HMG-CoA synthase | 2.08 | 2.37 | |
CA599972 | secondary metabolism.isoprenoids.mevalonate pathway.HMG-CoA synthase | 2.85 | 2.87 | |
BJ285801 | secondary metabolism.phenylpropanoids.lignin biosynthesis.PAL | 1.94 | 2.1 | |
CA640772 | secondary metabolism.phenylpropanoids.lignin biosynthesis.CAD | 2.21 | 2.04 | |
CK193717 | secondary metabolism.phenylpropanoids.lignin biosynthesis.HCT | 2.55 | 2.14 | |
CA676957 | secondary metabolism.N misc.alkaloid-like | 1.82 | 2.51 | |
BJ288127 | secondary metabolism.flavonoids.dihydroflavonols.dihydrokaempferol 4-reductase | 2.58 | 2.07 | |
CA653342 | C1-metabolism.dihydroneopterinaldolase | 0.44 | 0.53 | |
CA641602 | tetrapyrrole synthesis.ferrochelatase | 2.63 | 3.77 | |
BJ244873 | nucleotide metabolism.phosphotransfer and pyrophosphatases.misc | 2.05 | 4.31 | |
BJ320066 | misc.UDP glucosyl and glucoronyltransferases | 2.07 | 2.65 | |
BJ250503 | misc.UDP glucosyl and glucoronyltransferases | 1.98 | 2.05 | |
BJ292155 | misc.gluco-, galacto- and mannosidases | 2.35 | 2.61 | |
BJ292155 | misc.gluco-, galacto- and mannosidases | 2.49 | 2.73 | |
BJ208962 | misc.oxidases - copper, flavone etc. | 0.34 | 0.45 | |
CA733231 | misc.glutathione S transferases | 2.4 | 2.24 | |
AY064480 | misc.glutathione S transferases | 0.37 | 0.44 | |
CA733223 | misc.cytochrome P450 | 2.15 | 3.13 | |
CK169303 | misc.cytochrome P450 | 2.19 | 2.61 | |
AF031195 | misc.plastocyanin-like | 2.36 | 2.15 | |
BJ283868 | misc.protease inhibitor/seed storage/lipid transfer protein (LTP) family protein | 0.35 | 0.49 | |
BQ162656 | misc.protease inhibitor/seed storage/lipid transfer protein (LTP) family protein | 0.35 | 0.43 | |
BQ838076 | misc.protease inhibitor/seed storage/lipid transfer protein (LTP) family protein | 0.15 | 0.26 | |
BQ170864 | misc.protease inhibitor/seed storage/lipid transfer protein (LTP) family protein | 3.01 | 0.48 | |
BQ838076 | misc.protease inhibitor/seed storage/lipid transfer protein (LTP) family protein | 0.13 | 0.24 | |
CD453971 | misc.acid and other phosphatases | 1.97 | 2 | |
CA662320 | misc.short chain dehydrogenase/reductase (SDR) | 2.65 | 2.43 | |
BJ280289 | misc.short chain dehydrogenase/reductase (SDR) | 2.04 | 2.44 | |
CA719923 | misc.GDSL-motif lipase | 0.46 | 2.98 | |
CA608846 | Development proteins (assigned genes: 18) | stress.biotic | 1.94 | 2.43 |
AF112966 | stress.biotic | 2.36 | 1.88 | |
CA721939 | stress.biotic | 3.56 | 2.99 | |
CA602902 | stress.biotic | 0.11 | 0.15 | |
CD453602 | stress.biotic | 0.2 | 0.43 | |
CA602902 | stress.biotic | 0.097 | 0.15 | |
CA611464 | stress.abiotic.heat | 2.11 | 2.18 | |
CD373694 | stress.abiotic.drought/salt | 0.3 | 0.26 | |
CA696591 | stress.biotic.PR-proteins | 2.21 | 2.75 | |
CK216297 | stress.abiotic.unspecified | 0.42 | 0.25 | |
CK216158 | stress.abiotic.unspecified | 1.63 | 2.45 | |
CK199583 | development.late embryogenesis abundant | 0.47 | 0.26 | |
CA604393 | development.unspecified | 1.8 | 2.35 | |
CA639698 | development.unspecified | 1.84 | 2.54 | |
BJ267646 | development.unspecified | 4.1 | 2.05 | |
BJ284862 | development.unspecified | 0.48 | 0.4 | |
BQ161132 | development.unspecified | 2.54 | 3.05 | |
BJ274121 | development.unspecified | 0.41 | 0.38 | |
CA728921 | Transporting (assigned genes: 11) | transporter.sugars | 2.84 | 1.92 |
BJ286275 | transport.amino acids | 0.38 | 0.39 | |
CA663166 | transport.potassium | 2.13 | 2.54 | |
CN012655 | transport.metabolite transporters at the mitochondrial membrane | 2.54 | 2.64 | |
CA647258 | transport.metabolite transporters at the mitochondrial membrane | 1.93 | 2.02 | |
CA647258 | transport.metabolite transporters at the mitochondrial membrane | 2.63 | 2.49 | |
CN012655 | transport.metabolite transporters at the mitochondrial membrane | 2.38 | 3.1 | |
CA641308 | transport.ABC transporters and multidrug resistance systems | 2.96 | 2.17 | |
CA640534 | transport.ABC transporters and multidrug resistance systems | 2.77 | 2.62 | |
CA719491 | transport.misc | 2.07 | 3.27 | |
BJ267436 | transport.misc | 2.21 | 2.34 | |
CA695230 | Hormones and Signaling (assigned genes: 13) | hormone metabolism.gibberelin.synthesis-degradation | 3.32 | 3.47 |
BT008949 | hormone metabolism.auxin.signal transduction | 0.38 | 0.47 | |
CD452527 | hormone metabolism.ethylene.induced-regulated-responsive-activated | 0.28 | 0.45 | |
CD866886 | hormone metabolism.ethylene.induced-regulated-responsive-activated | 0.44 | 0.26 | |
CA669976 | hormone metabolism.jasmonate.synthesis-degradation.12-Oxo-PDA-reductase | 2.09 | 2.2 | |
CD373926 | hormone metabolism.jasmonate.synthesis-degradation.12-Oxo-PDA-reductase | 1.87 | 3.19 | |
CD492184 | signalling.receptor kinases.leucine rich repeat III | 0.56 | 0.53 | |
CA614315 | signalling.calcium | 0.09 | 0.23 | |
CA614315 | signalling.calcium | 0.075 | 0.24 | |
BJ268280 | signalling.calcium | 2.38 | 3.8 | |
CA608459 | redox.thioredoxin | 1.66 | 2.25 | |
CA607898 | redox.ascorbate and glutathione.glutathione | 2.3 | 2.93 | |
BE426829 | redox.ascorbate and glutathione.glutathione | 0.36 | 1.99 | |
CA619551 | Cellular processes (assigned genes: 20) | RNA.transcription | 0.35 | 0.4 |
CA741924 | RNA.regulation of transcription.bHLH,Basic Helix-Loop-Helix family | 0.2 | 0.45 | |
CD453519 | RNA.regulation of transcription.WRKY domain transcription factor family | 1.64 | 1.98 | |
CA611439 | RNA.RNA binding | 1.78 | 1.79 | |
D37943 | DNA.synthesis/chromatin structure.histone | 0.48 | 0.39 | |
D38090 | DNA.synthesis/chromatin structure.histone | 0.38 | 0.35 | |
D38087 | DNA.synthesis/chromatin structure.histone | 0.37 | 0.41 | |
CA674072 | protein.synthesis.ribosomal protein.prokaryotic.chloroplast.30S subunit.S11 | 0.62 | 0.57 | |
CA697403 | protein.synthesis.ribosomal protein.prokaryotic.chloroplast.30S subunit.S19 | 0.43 | 0.55 | |
CA716133 | protein.postranslational modification | 1.93 | 2.2 | |
CA655039 | protein.postranslational modification | 3.09 | 2.81 | |
BJ227360 | protein.postranslational modification | 0.41 | 0.47 | |
BJ240977 | protein.postranslational modification | 2.7 | 2.27 | |
BJ274189 | protein.postranslational modification | 0.25 | 0.44 | |
BQ161936 | protein.postranslational modification | 0.39 | 0.44 | |
CA606579 | protein.degradation | 1.88 | 2.14 | |
BJ251154 | protein.degradation | 0.32 | 2.71 | |
CA699722 | protein.degradation | 1.68 | 4.28 | |
CA642033 | protein.degradation.ubiquitin.E3.SCF.cullin | 2.14 | 2.34 | |
BQ246681 | cell. organisation | 2.68 | 2.74 | |
BQ806459 | Miscellanious (assigned genes: 2) | Biodegradation of Xenobiotics.lactoylglutathionelyase | 5.29 | 2.3 |
BQ806459 | Biodegradation of Xenobiotics.lactoylglutathionelyase | 5.61 | 2.3 | |