Table 1 Descriptions of the bacterial genomes and sequence reads that were used in this paper. All data sets are paired-end reads
From: HGA: de novo genome assembly method for bacterial genomes using high coverage short sequencing reads
Dataset | Genome | GC content | Sequencing | Read | Fragment | Avg. | # |
|---|---|---|---|---|---|---|---|
size (Mb) | (%) | technology | length (bp) | length (bp) | Coverage | Proteins | |
Bacillus cereus ATCC 10987 | 5.4 | 35 | MiSeq | 250 | 600 | 100x | 6,014 |
Mycobacterium abscessus 6G | 5.1 | 64 | HiSeq | 100 | 335 | 115x | 4,992 |
Mycobacterium abscessus 6G | 5.1 | 64 | MiSeq | 250 | 335 | 100x | 4,992 |
Rhodobacter sphaeroides 2.4.1 | 4.6 | 69 | HisSeq | 101 | 220 | 210x | 4,474 |
Rhodobacter sphaeroides 2.4.1 | 4.6 | 69 | MiSeq | 251 | 540 | 100x | 4,474 |
Vibrio cholerae CO1032(5) | 4.0 | 48 | HiSeq | 100 | 335 | 110x | 3,693 |
Vibrio cholerae CO1032(5) | 4.0 | 48 | MiSeq | 250 | 335 | 100x | 3,693 |