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Fig. 8 | BMC Genomics

Fig. 8

From: De novo transcriptomic assembly and profiling of Rigidoporus microporus during saprotrophic growth on rubber wood

Fig. 8

qRT-PCR validation of RNA-Seq expression data. Open bars represent control (C) and closed bars, treatment (W). RNA-Seq relative expression corresponds to log2 fold change (FC) of the fragments per kilobase per million reads (FPKM). qRT-PCR relative expression corresponds to log2 FC of the ddCt values normalized with the reference gene 18S. Bars represent standard error. (Abbreviations: GH, Glycoside hydrolase; CE, Carbohydrate esterase; Fet3, Ferroxidase; MnP, Manganese peroxidase; Ox.red, Oxidoreductase; A/K, Aldo/Keto; HY, Hydrolase; deH, Dehydrogenase; Cyt, Cytochrome; NAD-B, NAD-Binding protein; Tp, Terpenoid). Gene ID of unigenes:[GH7 (CL2079.Contig4), GH43 (CL114. Contig6), GH55 (CL2076.Contig2), GH61 (CL374.Contig4), CE7 (CL2913.Contig1), α/keto glutarate (CL993.Contig4), α/β hydrolase (Unigene4438), Cyanase (CL4402.Contig4), Laccase (CL2007.Contig2), Fet3 (CL3130.Contig1), MnP2 (CL4964.Contig4), MnP3 (CL29.Contig8), Ox.red (CL583.Contig21), A/K reductase (CL714.Contig6), Metallo-HY (CL2357.Contig2), Alcohol deH (CL331.Contig2), CytP450 (CL3949.Contig1), NAD-B (CL4886. Contig1), Cerato platanin (Unigene4679), Tp synthase (CL900.Contig2), Cu Uptake transporter (CL4549.Contig2), Fe reductase (CL1619. Contig4), Fungal hydrophobin (Unigene6195)]

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