Fig. 4
From: A method for near full-length amplification and sequencing for six hepatitis C virus genotypes
Subject HITSP300345_160412 was identified as being infected with two HCV genotypes (GT), GT1a and GT3a. The HCV near full-length amplification protocol was adapted to amplify both subtypes in the same reaction and the amplicon was submitted for next generation sequencing with the MiSeq 2 × 300 PE chemistry. Analysis of the aligned reads identified two populations, a GT1a and a GT3a population. The presence of two HCV viral populations is shown in a coverage plot stratified by genome position