Table 1 Overview of the sequencing and assembly
| Â | C | E-8 | E-24 | Total |
|---|---|---|---|---|
Total Raw Reads | 55,532,586 | 54,200,296 | 54,549,846 | Â |
Total Clean Reads | 53,177,976 | 51,965,770 | 52,303,714 | Â |
Total Clean Nucleotides (nt) | 4,786,017,840 | 4,676,919,300 | 4,707,334,260 | Â |
Q20 percentage | 98.24Â % | 98.30Â % | 98.30Â % | Â |
N percentage | 0.00Â % | 0.00Â % | 0.00Â % | Â |
GC percentage | 43.33Â % | 43.48Â % | 43.31Â % | Â |
Contig | ||||
Total Number | 139,806 | 140,407 | 138,182 | Â |
Total Length (nt) | 49,459,322 | 49,507,343 | 49,415,302 | Â |
Mean Length (nt) | 354 | 353 | 358 | Â |
N50 | 667 | 659 | 683 | Â |
Unigene | ||||
Total Number | 80,800 | 81,335 | 80,048 | 84,425 |
Total Length (nt) | 65,946,686 | 65,357,057 | 65,398,163 | 92,963,404 |
Mean Length (nt) | 816 | 804 | 817 | 1101 |
N50 | 1,652 | 1,640 | 1,673 | 1,875 |
Total Consensus Sequences | 80,800 | 81,335 | 80,048 | 84,425 |
Distinct Clusters | 30,702 | 29,583 | 30,307 | 40,642 |
Distinct Singletons | 50,098 | 51,752 | 49,741 | 43,783 |