From: A streamlined tethered chromosome conformation capture protocol
Technology | NextSeq 38X2 | NextSeq 38X2 | NextSeq 38X2 | NextSeq 38X2 |
---|---|---|---|---|
Sample | N2 Adults AvaII | N2 Adults DpnII | glp-1 Adults AvaII | glp-1 Adults DpnII |
GEO accession | GSM2041037 - SRR3105473 | GSM2041038 - SRR3105476 | GSM2041039 - SRR3105478 | GSM2041040 – SRR3105481 |
Total number of reads | 92,039,660 | 101,295,678 | 67,052,017 | 195,829,257 |
Both sides aligned | 50,361,629 | 54,717,285 | 34,869,674 | 101,403,196 |
Concordant Pairs | 15,870,773 | 20,572,866 | 11,655,151 | 30,231,656 |
intra-chromosomal Pairs | 3,131,465 | 14,303,981 | 4,519,524 | 17,089,727 |
inter-chromosomal Pairs | 1,207,782 | 4,628,515 | 1,182,249 | 5,294,659 |
Hi-C valid pairs | 4,339,247 | 18,932,496 | 5,701,773 | 22,384,386 |
% Hi-C valid pairs | 8.6 | 34.6 | 16.4 | 22.1 |