From: A streamlined tethered chromosome conformation capture protocol
Technology | MiSeq 78X2 | MiSeq 78X2 | MiSeq 78X2 | MiSeq 78X2 |
---|---|---|---|---|
Sample | N2 Adults AvaII | N2 Adults DpnII | glp-1 Adults AvaII | glp-1 Adults DpnII |
GEO accession | GSM2041037- SRR3105474 | GSM2041038 - SRR3105477 | GSM2041039 - SRR3105479 | GSM2041040 –SRR3105482 |
Total number of reads | 6,209,078 | 6,763,705 | 5,447,839 | 9,770,754 |
Both sides aligned | 4,206,958 | 4,879,863 | 3,807,291 | 6,697,162 |
Concordant Pairs | 2,888,881 | 2,439,233 | 2,284,399 | 3,739,874 |
intra-chromosomal Pairs | 642,277 | 1,718,469 | 911,315 | 1,863,649 |
inter-chromosomal Pairs | 223,318 | 553,223 | 223,826 | 573,671 |
Hi-C valid pairs | 865,595 | 2,271,692 | 1,135,141 | 2,437,320 |
% Hi-C valid pairs | 20.6 | 46.6 | 29.8 | 36.4 |