Table 4 The identified candidate genes involved in various flowering pathways of radish

ABH1/ENS

1

Photoperiod

AGL12

1

Others

AGL14

1

Others

AGL15

2

Photoperiod

AGL16

1

Others

AGL18

3

Photoperiod

AGL19

2

Vernalization

AGL24

2

Photoperiod

AGL6

7

Photoperiod

AGL8/FUL

4

Photoperiod

AP1

5

Photoperiod

AP2

6

Photoperiod

AP3

3

Photoperiod

ARP4

3

Photoperiod

ARP6

1

Vernalization

ARR3

2

Photoperiod

ATH1

3

flower development

ATX1

6

flower development

CBF1

1

Vernalization

CBF2

1

Vernalization

CCA1

3

Photoperiod/Circadian clock

CCR2

3

Autonomous

CDF1

5

Photoperiod

CDF2

1

Photoperiod

CDF3

1

Photoperiod

CO

3

Photoperiod/Circadian clock

COL1

2

Photoperiod/Circadian clock

COL2

1

Photoperiod/Circadian clock

COL3

1

Photoperiod

COL4

3

Photoperiod

COL5

4

Photoperiod

COL9

2

Photoperiod/Circadian clock

COP1

1

Photoperiod

CRY1

4

Photoperiod/Circadian clock

CRY2

1

Photoperiod/Circadian clock

CSTF64

2

Vernalization

CSTF77

4

Vernalization

DDF1

7

GA

DDF2

2

GA

DDL

1

flower development

EBS

3

Photoperiod

EFS

2

flower development

ELF3

6

Photoperiod/Circadian clock

ELF4

1

Photoperiod/Circadian clock

ELF5

1

Photoperiod

ELF6

1

Photoperiod

ELF7

2

Photoperiod

ELF8

1

Photoperiod

ELF9

1

Photoperiod

EMF1

1

Vernalization

ESD4

1

Vernalization

FCA

2

Autonomous

FD

4

Photoperiod

FES1

2

Vernalization

FIE

3

others

FIP1

2

Vernalization

FIP2

1

Vernalization

FLC

3

integrator

FLD

1

Autonomous

FLK

4

Autonomous

FLM/MAF1

1

Photoperiod

FLP1

1

flower development

FPA

3

Autonomous

FPF1

1

GA

FRI

1

Vernalization

FT

1

integrator

FVE/MSI4

7

Autonomous

FY

1

Autonomous

GA3

1

GA

GAI

2

GA

GI

5

Photoperiod/Circadian clock

GID1A

2

GA

GID1B

4

GA

GID1C

2

GA

GNC

2

GA

GNL

2

GA

HUA2

5

Vernalization

HYL1/DRB1

2

others

LCL1

3

Photoperiod/Circadian clock

LD

4

Autonomous

LDL2

1

flower development

LFY

3

integrator

LHP1

3

Vernalization

LHY

2

Photoperiod/Circadian clock

LKP2

3

Photoperiod/Circadian clock

LWD1/ATAN11

1

Photoperiod/Circadian clock

LWD2

1

Photoperiod/Circadian clock

MBD9

6

Photoperiod

MYB33

2

GA

MYB65

3

GA

NF-YA1/HAP2A

1

Photoperiod

NF-YA4

3

Photoperiod

NF-YB1

2

Photoperiod

NF-YB2

3

Photoperiod

pEARLI

2

Vernalization

PHYA

2

Photoperiod/Circadian clock

PHYB

2

Photoperiod/Circadian clock

PHYC

3

Photoperiod/Circadian clock

PHYD

1

Photoperiod/Circadian clock

PHYE

9

Photoperiod/Circadian clock

PI

2

flower development

PIE1

4

Photoperiod

PRC2/CLF/EMF2

5

Vernalization

PRR3

3

Photoperiod/Circadian clock

PRR7

7

Photoperiod/Circadian clock

PRR9

1

Photoperiod/Circadian clock

REF6

6

Vernalization

RGA

2

GA

RGL1

2

GA

RGL2

1

GA

SDG10/SWN

2

Vernalization

SEP1/AGL2

4

Others

SEP2/AGL4

4

Others

SEP3/AGL9

6

flower development

SHP1/AGL1

3

flower development

SHP2/AGL5

3

flower development

SKB1

2

Vernalization

SOC1/AGL20

2

integrator

SPA

9

Photoperiod

SPL

2

Age

SPL3

4

Age

SPL5

2

Age

SPL9

4

Age

SPY

3

GA

SUF4

8

Vernalization

SVP/AGL22

3

Vernalization

TEM1

6

Photoperiod

TEM2

7

Photoperiod

TFL2

3

Photoperiod

TIC

10

Photoperiod/Circadian clock

TOE1

3

Photoperiod

TOE2

2

Photoperiod

TOE3

3

Photoperiod

TPS1

4

Others

VEL1

2

Photoperiod

VIN3

1

Vernalization

VIP1

2

Vernalization

VIP2

2

Vernalization

VRN1

9

Vernalization

VRN2

2

Vernalization

WNK1

3

Photoperiod/Circadian clock