Table 3 Differential OTUs in healthy or diseased animals from a Spanish farm (EJ) with Glässer’s disease (GD)

Actinobacteria

3.5894

2.1710

Actinobacteria

Actinomycetales

Corynebacteriaceae

1.9080

0.7514

Corynebacteria

1.9067

0.7491

Bacteroidetes

13.5458

26.7920

Bacteroidia

Bacteroidales

Bacteroidaceae

1.2506

4.6349

Bacteroides

1.2499

4.6337

Porphyromonadaceae

2.3659

8.3669

Barnesiella

1.6559

6.0845

Prevotellaceae

1.5082

2.6173

Prevotella

1.0668

1.4726

Flavobacteriaceae

6.8750

5.6079

Planobacterium

2.7625

1.5614

Weeksellaceae

4.1125

4.0465

Weeksella

3.3241

3.4334

Rikenellaceae

0.8218

3.5809

Alistipes

0.8218

3.5809

Firmicutes

27.6055

40.7701

Bacilli

Bacillales

Staphylococcaceae

1.4925

0.3198

Staphylococcus

1.4091

0.2708

Lactobacillales

Lactobacillaceae

2.0031

1.9052

Lactobacillus

1.6017

1.6558

Streptococcaceae

9.6119

3.5364

Streptococcus

9.5011

3.4847

Leuconostocaceae

1.2007

0.4920

Clostridia

Clostridiales

11.4187

32.7266

Lachnospiraceae

4.8052

18.2475

Clostridium XlVa

1.4577

5.2715

Ruminococcaceae

3.0923

8.8928

Clostridium IV

0.3956

1.2496

Flavonifractor

0.3921

1.3451

Oscillibacter

0.7196

2.5839

Pseudoflavonifractor

0.3489

1.3273

Proteobacteria

47.1815

27.1889

Betaproteobacteria

Neisseriales

Neisseriaceae

1.5019

0.9755

Kingella

1.3684

0.5617

Gammaproteobacteria

Pasteurellales

Pasteurellaceae

13.3683

3.2420

Haemophilus

11.4522

2.5269

Actinobacillus

1.6611

0.5107

Pseudomonadales

Moraxellaceae

30.2896

17.5549

Moraxella

29.4876

17.0946

Tenericutes

5.1086

0.3500

Mollicutes

Mycoplasmatales

Mycoplasmataceae

4.9747

0.0823

Mycoplasma

4.9747

0.0823