Table 2 Summary of Anabaena sp. WA102 genome (Genbank:CP011456-7) annotation according to the Prokka script and NCBI Prokaryotic Annotation Pipeline
Chromosome | ||||
Category | Element | NCBI | Prokka | Manual |
Protein-coding genes: | Total | 4667 | 5175 | NA |
| Â | Hypothetical proteins | 1824 | 2187 | NA |
| Â | Transposases | 79 | 82 | 130 |
| Â | Homing endonucleases | 7 | 30 | 30 |
| Â | Histidine kinases | 25 | 26 | NA |
RNA genes: | rRNA operons | 5 | 5 | NA |
| Â | tRNAs | 43 | 44 | NA |
| Â | Riboswitches | 2 | NA | NA |
Pseudogenes: | Total | 365 | NA | NA |
| Â | Hypothetical proteins | 186 | NA | NA |
| Â | Transposases | 29 | NA | NA |
| Â | Homing endonucleases | 6 | NA | NA |
| Â | Histidine kinases | 1 | NA | NA |
Plasmid | ||||
Protein-coding genes: | Total | 75 | 96 | NA |
| Â | Hypothetical proteins | 57 | 66 | NA |
| Â | Transposases | 3 | 2 | NA |
| Â | Homing endonucleases | 0 | 0 | NA |
Pseudogenes: | Total | 13 | NA | NA |
| Â | Hypothetical proteins | 10 | NA | NA |
| Â | Transposases | 0 | NA | NA |
| Â | Homing endonucleases | 1 | NA | NA |