Table 2 PCR primers used in this study
Targeted gene or region | Primer sequencea | |
|---|---|---|
P4 cinI | F : | GGCGCAATACCTCAATTGATTG |
R : | CATCATGGACGTCGTATCGATC | |
P4 pAt non coding-region (coord. 36817–37590b) | F : | CATCTCGTTGATCGCAACATGGTCGTT |
R : | GATTTGGATGCTTCAACCGAAGATTTATTTGC | |
P4 pAt non encoding-region (coord. 36950–37353b) | F : | CCGAAAGTAACATTTGATGCCCCAACTGAATTTT |
R : | ATAACTGACAGGCATGCGAAAGCCGTC | |
P4 cinR cinI cinX | F : | TGCTTGTCGTCTGCGCCGTGAGA |
R : | CTCAAACACCGCTGGAGCGAACTCA | |
P4 avhB5 RT-qPCR | F: | CCAAGCAGATCGAGAGCAT |
R: | TTGTTGAGCGAGCCATAAAG | |
P4 avhB11 RT-qPCR | F: | ACGCTTTCCAAAGCATTGAT |
R: | CGTGGTTCGGTTGTGAGATA | |
P4 AGROTU_05920 RT-qPCR | F: | TTGTTGAATGTATGCGGGTT |
R: | TATGCGCTGTGGAGATATGG | |
P4 traA RT-qPCR | F: | CGAGCTGTTCCTCACTACAGT |
R: | TTCAATCTTTCCGACAGCACC | |
P4 cinR RT-qPCR | F: | CGTCGGAGAGTTCGGTTATT |
R: | CCTGCAACAAGTCTGTCCC | |
P4 cinI (internal) RT-qPCR | F: | ATATGGGAAGGCACACGAAT |
R: | AAAGGAACCCAAACGCTCTA | |
P4 cinX RT-qPCR | F: | AATATCGGCAGGAGCATTTC |
R: | GCTCATGCTCAAGGTCAAAG | |
P4 traG RT-qPCR | F: | GATTTCGATTCGACCCACAT |
R: | AGCGGGCCTGTATATCTGAG | |
P4 gyrB RT-qPCR | F: | GATGGCAAGGCCTATGAAAC |
R: | CACTTCCAGAAGATCGGACA | |
P4 blcR RT-qPCR | F: | CGACATTCAACGACCATCTC |
R: | CAGCCGATGTAAACGACTTC |