Table 2 Amino acid residue changes resulting from non-synonymous nucleotide polymorphisms, including insertions/deletions, compared to the reference isolate (F2 strain) of FHV-1
From: Low genetic diversity among historical and contemporary clinical isolates of felid herpesvirus 1
Gene | AA changea | Variant isolates b |
|---|---|---|
Unique long region | ||
UL1 | F4L | 135/68 |
UL3.5 | V15I | 2004/2005 |
UL5 | T7I | 124/68, 3235/06, 3236/06, 3238/06 |
UL13 | S25P | 85/68, 117/68, 124/68, 135/68, 221/71, 356/75, 385/75, 448/77, 571/79, 729/83,3235/06, 3236/06, 3238/06 |
UL16 | F344V | 2004/2005 |
UL17 | R519Q | 2004/2005 |
UL21 | A48D | 3234/05 |
UL25 | T60A | 2004/2005 |
UL27 | P872L | 3235/06, 3236/06, 3238/06 |
UL28 | Q427P | All |
UL29 | S1089P | Field |
UL30 | M943I | 3228/05, 3230/05 |
I153T | 729/83 | |
UL35 | R3S | NC_013590 |
UL36 | G2503E | 3230/05 |
V1310M | 124/68 | |
T2565M | 221/71 | |
N2936- | 135/68 | |
V2937- | 135/68 | |
Q2980K | 117/68 | |
P2838S | 85/68, 117/68, 124/68, 135/68, 221/71, 356/75, 385/75, 448/77, 571/79, 729/83, 3235/06, 3236/06, 3238/06 | |
UL37 | L866F | 2004/2005 |
UL38 | I277M | Field |
UL40 | V66I | Field |
UL44 | E133K | All |
UL45 | R102H | 729/83 |
UL49 | T104I | 3236/06 |
UL52 | Y484C | Field |
S579I | 3225/05 | |
UL54 | I206V | 2004/2005 |
S60P | 135/68 | |
UL55 | I78M | Field |
V1 | D59G | 124/68 |
ICP0 | S412F | 356/75, 571/79 |
Unique short region | ||
US7 | M165T | Field |
P186S | 124/68, 3235/06, 3236/06, 3238/06 | |
Repeat region | ||
ICP4 | T156N | 124/68, 3235/06, 3236/06, 3238/06 |
A419V | 85/68, 117/68, 124/68, 135/68, 221/71, 3235/06, 3236/06, 3238/06 | |
H875Q | 385/75 | |
V983A | 356/75, 571/79, 3224/04, 3225/05, 3226/05, 3227/05, 3228/05, 3229/05, 3230/05, 3231/05, 3232/05, 3233/05, 3234/05 | |
E1034K | 3235/06, 3236/06, 3238/06 | |
E1054G | 2004/2005 | |
US1 | L261- | 85/68 |