Table 3 Alignment and tree accuracy metrics for UPP alignments on 10,000 sequences
From: Scaling statistical multiple sequence alignment to large datasets
Data | Backbone | Prec. | Rec. | TC | Δ-RF |
|---|---|---|---|---|---|
| Â | P(default) | 96.2 % | 93.6 % | 2.6 % | 0.77 % |
Indelible | P+BAli-Phy | 97.8 % | 95.6 % | 4.3 % | 0.54 % |
| Â | P+MAFFT-L | 97.3 % | 95.0 % | 3.2 % | 0.62 % |
| Â | P(default) | 90.8 % | 90.5 % | 0.5 % | 0.77 % |
RNAsim | P+BAli-Phy | 91.4 % | 91.0 % | 0.6 % | 0.67 % |
| Â | P+MAFFT-L | 89.4 % | 89.1 % | 0.5 % | 0.67 % |