Gene expression profile of intramuscular muscle in Nellore cattle with extreme values of fatty acid

Berton, Mariana P.; Fonseca, Larissa F. S.; Gimenez, Daniela F. J.; Utembergue, Bruno L.; Cesar, Aline S. M.; Coutinho, Luiz L.; de Lemos, Marcos Vinicius A.; Aboujaoude, Carolyn; Pereira, Angélica S. C.; Silva, Rafael M. de O; Stafuzza, Nedenia B.; Feitosa, Fabieli L. B.; Chiaia, Hermenegildo L. J.; Olivieri, Bianca F.; Peripolli, Elisa; Tonussi, Rafael L.; Gordo, Daniel M.; Espigolan, Rafael; Ferrinho, Adrielle M.; Mueller, Lenise F.; de Albuquerque, Lucia G.; de Oliveira, Henrique N.; Duckett, Susan; Baldi, Fernando

doi:10.1186/s12864-016-3232-y

BMC Genomics

Table 3 Description of differentially expressed genes identified between groups of Nellore bulls with different fatty acid composition in longissimus thoracis muscle

From: Gene expression profile of intramuscular muscle in Nellore cattle with extreme values of fatty acid

Ensembl_gene_ID	Gene symbol	BTA: locus	Function	FA	Fold change	q value
ENSBTAG00000033803	FABP7	9:28834077–28837863	Cytosolic fatty-acid and lipid binding	C18:3 n3	27.891	0.010
ENSBTAG00000022570	LOC782922	13:43947620–44116989	Fatty acid metabolic process	MUFA	−2.100	0.007
ENSBTAG00000004860	SLC27A6	7:26237928–26329594	Fatty acid transporter	MUFA	0.855	0.004
ENSBTAG00000012885	ACAT1	15:17999931–18028984	Fatty acid metabolism, Synthesis and degradation of ketone bodies	n6	0.444	0.047
ENSBTAG00000005105	PAFAH2	2:127684836–127720396	Lipid catabolic process	C18:0	−0.750	0.050
ENSBTAG00000022449	SCD5_BOVIN	6:99233278–99410753	Fatty acid metabolic process; fatty acid, unsaturated fatty acid and lipid biosynthetic process	C18:0	0.821	0.030
ENSBTAG00000001444	TNXB	23:27083668–27136954	Fatty acid metabolism	C18:1cis-9	−0.640	0.004
ENSBTAG00000006716	PTGS1	11:93219286–93245045	Fatty acid metabolic process; fatty acid and unsaturated fatty acid biosynthetic process	C18:1cis-9	−0.824	0.010
ENSBTAG00000007763	SLC1A4	11:63290421–63395507	Carboxylic acid transport	C18:0	−1.502	0.006
ENSBTAG00000015228	CD74	7:63748884–63756646	Organic acid and lipid biosynthetic process	C18:0	0.605	0.033
ENSBTAG00000016819	FABP3	2:122723224–122783830	Cytosolic fatty-acid and lipid binding	PUFA/SFA	0.895	0.011
ENSBTAG00000011917	GPAM	26:32963413–33003349	Fatty acid metabolic process	PUFA/SFA	−0.664	0.011
ENSBTAG00000018248	MGLL	22:60443563–60493810	Lipid metabolism	PUFA/SFA	−0.620	0.011
ENSBTAG00000038321	LIPE	18:51216018–51227395	Lipid catabolic process, and Insulin signaling pathway	PUFA/SFA	−0.620	0.011
ENSBTAG00000004178	ACOX2	22:43379503–43410315	Metabolic and catabolic process, beta-oxidation of fatty acid, lipid catabolic process and organic acid catabolic process	n6	−0.486	0.025
ENSBTAG00000008063	PPARA	5:117151548–117233112	Fatty acid metabolic process	n6	−0.534	0.003
ENSBTAG00000017542	PPARD	23:9340954–9353750	metabolic and catabolic process, beta-oxitation, transport and oxidation of fatty acids	n6	−0.643	0.011
ENSBTAG00000033089	PTPLA	13:32347675–32369621	Biosynthesis of unsaturated fatty acids	ω6	0.500	0.016
ENSBTAG00000007331	PLOD2	1:123322466–123444003	Carboxylic acid binding	C18:2cis-9cis-12 PUFA	0.886 0.975	0.013 0.008
ENSBTAG00000001417	ACSM1	25:18349701–18413889	Metabolic and biosynthetic process of fatty acid; biosynthetic process of lipid, organic acid and carboxylic acid.	n3 n6	−176.413 −132.855	0.013 0.006
ENSBTAG00000019813	ADIPOQ	1:81005167–81018328	Metabolic and catabolic process, beta-oxidation and oxidation and regulation of metabolic of fatty acid	n3 n6	−118.366 −0.900	0.013 0.005
ENSBTAG00000037526	FABP4	14:46833664–46838053	Cytosolic fatty-acid binding	n3 ω6	−135.344 −0.927	0.013 0.016
ENSBTAG00000001154	DGAT2	15:55940756–55973229	Lipid biosynthetic process	C18:2cis-9cis-12 C16:0 PUFA/SFA	−0.626 0.654 −0.960	0.025 0.031 0.011
ENSBTAG00000021287	SLC16A7	5:53987908–54214799	Monocarboxylic acid transmembrane transporter activity	C14:0 C18:0 n3	0.816 0.860 −167.220	0.040 0.018 0.013
ENSBTAG00000005259	UCP3	15:54213565–54224051	Fatty acid metabolic process	C18:1cis-9 MUFA n6	0.615 0.855 −0.735	0.023 0.004 0.002
ENSBTAG00000016864	LBP	13:67874473–67910095	Lipid transport	C14:0 C16:0 SFA	1.950 1.880 186.970	0.040 0.006 0.014
ENSBTAG00000012855	LPL	8:67481088–67511227	Metabolic and biosynthetic process of fatty acid	C16:0 C18:1cis-9 PUFA/SFA n3	0.870 −0.568 −114.732 −0.841	0.02 0.033 0.011 0.042
ENSBTAG00000015978	ANXA1	8:49624472–49642916	Transport of lipid, monocarboxylic acid, organic acid, fatty acid, long-chain fatty acid and carboxylic acid; arachidonic acid secretion	C18:0 C18:1cis-9 MUFA PUFA n6	0.826 −0.891 −0.740 0.717 0.646	0.006 0.004 0.004 0.008 0.002
ENSBTAG00000006447	ACSM3	25:18605634–18656582	Lipid metabolism	C18:2cis-9cis-12 MUFA PUFA SFA n3	−1.853 2.455 −1.965 −19.001 −173.510	0.012 0.004 0.008 0.033 0.023
ENSBTAG00000004281	ACSS1	13:42963403–43076853	Acetyl-CoA metabolic process	C14:0 C16:0 C18:0 C18:1cis-9 SFA n3	1.184 1.088 1.531 −1.180 122.248 −147.662	0.040 0.043 0.006 0.032 0.033 0.013
ENSBTAG00000016514	CPE	17:546397–697915	Insulin processing	C14:0 C16:0 C18:1cis-9 SFA MUFA n3	1.490 1.683 −1.399 139.560 −1.279 −101.4	0.040 0.006 0.038 0.014 0.004 0.049
ENSBTAG00000000448	BDH1	1:72572940–72608810	Synthesis and degradation of ketone bodies	C14:0 C16:0 C18:0 SFA C18:2cis-9cis-12 MUFA n3	1.045 1.212 1.534 105.874 −0.854 −0.925 −174.448	0.040 0.020 0.006 0.014 0.043 0.004 0.013

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