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Table 3 Correlation results on Sample B, replicate 1 for different sequence lengths. A total of 907 genes are evaluated

From: Sequence-specific bias correction for RNA-seq data using recurrent neural networks

Sequences of 21bp length

   

Method

Pearson

Spearman

r 2

Raw normalized counts

0.8758

0.8598

0.7670

seqBias

0.8764

0.8655

0.7681

GRU(4-10-4)

0.8793

0.8664

0.7732

LSTM(4-10-4)

0.8775

0.8624

0.7700

Sequences of 41bp length

   

Raw normalized counts

0.8758

0.8598

0.7670

seqBias

0.8770

0.8665

0.7692

GRU(4-10-4)

0.8795

0.8663

0.7735

LSTM(4-10-4)

0.8797

0.8689

0.7739

  1. The boldface numbers indicate the best performance in all comparisons
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BMC Genomics

ISSN: 1471-2164

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