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Table 1 Overview of proposed host-symbiont interaction proteins

From: Transcriptomic and proteomic insights into innate immunity and adaptations to a symbiotic lifestyle in the gutless marine worm Olavius algarvensis

Functional category

Protein family

Transcripts a)

Proteins b)

Pattern recognition proteins

 

peptidoglycan recognition proteins (PGRPs)

6 (16)

1

 

C-type lectins

33 (119)

5

 

R-type lectins

6 (18)

4

 

SUEL/rhamnose-binding lectins

7 (22)

1

 

galectins

3 (3)

1

 

fucolectin

1 (23)

0

 

fibrinogen-related proteins (FREPs)

27 (161)

1

 

toll-like/variable lymphocyte receptor-like (TLR/VLR)

13 (52)

1

 

scavenger receptor cysteine-rich (SRCR) domain proteins

25 (164)

1

 

beta-1,3-glucan binding protein

1 (1)

1

 

novel immunoglobulin I-set proteins

16 (17)

1

 

novel immunoglobulin V-set proteins

9 (22)

1

Antimicrobial proteins

 

lumbricin

1 (1)

1

 

invertebrate-type lysozyme

1 (1)

0

 

bactericidal permeability increasing protein BPI

1 (3)

1

 

insect defensin/reeler-like proteins

4 (8)

1

 

cysteine-rich secretory proteins (CRSPs)

6 (28)

2

 

membrane attack complex/perforin

2 (23)

0

Other immune effectors

 

ROS modulator 1

2 (3)

1

 

alpha-2-macroglobulin

10 (24)

1

 

kazal-type serpin

2 (8)

0

 

kunitz-type serpin

1 (2)

0

 

leukocyte elastase inhibitors

5 (25)

1

 

phosphatidylethanolamine-binding protein PEBP

3 (5)

1

Immune response regulators

 

Toll/interleukin-1 receptor (TIR) domain proteins

5 (9)

0

 

NF-kappa-B inhibitor Cactus

2 (6)

0

 

dorsal protein

2 (3)

1

 

evolutionarily conserved signaling intermediate in Toll (ECSIT)

1 (1)

0

 

Pelle protein

1 (1)

0

 

Relish protein

1 (6)

0

 

mitogen-activated protein kinase kinase kinase 7 (TAK1)

1 (1)

0

 

I-kappa-B-kinase alpha (IKK α)

1 (1)

0

 

I-kappa-B-kinase beta (IKK β)

1 (5)

0

 

interleukin-1 receptor-associated kinase 1 (IRAK1)

1 (2)

0

 

mitogen-activated protein kinase kinase kinase 4 (MEKK4)

1 (1)

0

 

sterile alpha and TIR motif-containing protein (SARM)

1 (3)

0

 

Toll-interacting protein Tollip

1 (2)

1

 

(LPS-induced) tumor necrosis factor (TNF)

3 (7)

0

 

Tumor necrosis factor (TNF)

4 (6)

0

 

tumor necrosis factor alpha-induced protein 3 (TNFAIP3)

1 (3)

0

 

tumor necrosis factor receptor associated proteins (TRAF)

9 (16)

0

 

IFN regulatory factor

8 (10)

0

 

IFN regulatory factor-binding protein

1 (1)

0

 

IFN-induced GTPase

7 (23)

1

 

macrophage migration inhibitory factor (MIF)

3 (24)

1

 

ILN enhancer binding factor 2

2 (4)

1

 

ILN-16

1 (1)

0

Digestive enzymes

 

carboxypeptidases

11 (22)

0

 

cathepsins total

15 (28)

4

 

cathepsin B

3 (12)

1

 

cathepsin C

2 (4)

0

 

cathepsin F

3 (3)

1

 

cathepsin L

5 (6)

2

 

cathepsin O

1 (2)

0

 

cathepsin Z

1 (1)

0

 

chymotrypsins

3 (17)

1

 

pancreatic elastase

1 (1)

1

 

alpha amylase

2 (3)

1

 

lysosomal alpha glucosidase

1 (3)

1

 

acid trehalase

2 (4)

1

 

sucrase-isomaltase

1 (1)

0

 

lysosomal acid lipase

1 (1)

0

Respiration

 

hemerythrin

2 (2)

2

 

giant extracellular hemoglobin, globin chains

12 (16)

8

 

giant extracellular hemoglobin, linker chains

6 (18)

5

sum

 

316 (1032)

60

  1. For more extensive details see Additional file 2: Table S8
  2. a)Number of transcripts defined as Trinity components, which approximately correspond to genes; see [13]; in parentheses: number of contigs (isoforms or fragments)
  3. b)Number of unique proteins