Table 17 Comparison of computational time on a simulation data for an individual with read coverage of 40 × and a real dataset for NA12878
From: STR-realigner: a realignment method for short tandem repeat regions
Method | Computational time | Computational time |
|---|---|---|
| Â | (Simulation data) | (Real data) |
STR-realigner | 2,928.90 [s] | 1,186.77 [s] |
ReviSTER | 5,230.72 [s] | 3,618.62 [s] |
GATK IndelRealigner | 357.46 [s] | 294.13 [s] |