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Table 1 Known Ae. aegypti TEs Active at the Protein Level in Aag2 Cells

From: Proteomics informed by transcriptomics for characterising active transposable elements and genome annotation in Aedes aegypti

TE Order

TE Clade

Element

ORF Detected

TEfam ID

LTR

Ty3/gypsy

Ele7

pol

TF000099

Ele19

gag

TF000110

Ele40

gag

TF000135

Ele50

env-like

TF000145

Ele54

env-like

TF000317

Ele55

env-like

TF000318

Ele69

gag

TF000341

Ele101

gag

TF000382

Ele104

pol

TF000385

Ele122

env-like

TF000419

Ele154

gag

TF000540

Ele227

gag

TF000507

BEL

Ele153

gag

TF000298

Non-LTR

R4

Ele1

ORF1

TF000040

Jockey

Ele1

ORF2

TF000019

  1. All elements are class I TEs. Detected proteins exhibit >95% amino acid homology and >95% sequence coverage with specified elements
  2. Bold typeface indicates Trinity transcripts associated with two or more peptides