Table 2 QTLs detected for vine, flowering, plant and fruit traits
QTL | Trait | LG | Genetic position (cM) | LOD interval | Flanking markers | Additive_effect | Model.pvalues | R2 | E.pvalue* | GxE.pvalue** |
|---|---|---|---|---|---|---|---|---|---|---|
Li_10 | Leaf incision | 10 | 33.9 | 61.8–66.9 | CP32_scaffold000009_2374010-CP32_scaffold000009_2556718 | 0.57 | 4.48E-10 | 50.05 | ||
Sl_12 | Silver leaf | 12 | 59.3 | 35.1–39.8 | CP32_scaffold000031_1726079-CP32_scaffold000031_2012785 | 0.19 | 3.87E-12 | 23.32 | ||
Sl_1 | Silver leaf | 1 | 132.5 | 1.9–10.1 | CP32_scaffold000084_728121-CP32_scaffold000059_548298 | 0.06 | 5.09E-03 | 3.83 | 5.77E-03 | 4.59E-02 |
Sl_16 | Silver leaf | 16 | 66.1 | 5.7–10.8 | CP32_scaffold000034_1033951-CP32_scaffold000028_1777958 | 0.11 | 1.22E-04 | 8.01 | 1.67E-02 | 4.04E-02 |
DFeF_12 | Days to female flowering | 12 | 33.1 | 2.6–4.8 | CP32_scaffold000074_621895-CP32_scaffold000096_181501 | 2.71 | 8.75E-08 | 7.87 | 3.00E-09 | |
DFeF_9 | Days to female flowering | 9 | 116.0 | 5.2–8.4 | CP32_scaffold000013_960688-CP32_scaffold000013_1308585 | 1.21 | 1.22E-02 | 2.61 | 4.07E-09 | 3.14E-02 |
IFSh_3 | Immature Fruit shape | 3 | 173.2 | 17.7–26.5 | CP32_scaffold000038_1385297-CP32_scaffold000038_1853138 | 0.40 | 1.57E-14 | 17.83 | ||
IFSh_12 | Immature fruit shape | 12 | 25.0 | 21.8–25.4 | CP32_scaffold000065_760668-CP32_scaffold000074_729362 | 0.25 | 4.77E-06 | 6.73 | ||
IFLe_3 | Immature Fruit length | 3 | 173.2 | 30.7–40.2 | CP32_scaffold000038_1385297-CP32_scaffold000038_1853138 | 2.11 | 2.27E-15 | 31.79 | 1.67E-02 | |
IFLe_15 | Immatute fruit length | 15 | 34.7 | 7.5–10.1 | CP32_scaffold000056_543412-CP32_scaffold000056_920404 | 0.96 | 4.79E-06 | 6.72 | 4.18E-02 | 4.40E-02 |
IFLe_12 | Immature fruit length | 12 | 24.2 | 8.9–11.7 | CP32_scaffold000065_589737-CP32_scaffold000074_729362 | 1.04 | 1.07E-06 | 7.61 | ||
IFWi_3 | Immature Fruit width | 3 | 171.0 | 10.5–13.9 | CP32_scaffold000038_1385297-CP32_scaffold000038_1853138 | 0.68 | 3.22E-15 | 18.68 | 1.93E-02 | |
MFSh_3 | Mature Fruit shape | 3 | 171.0 | 5.5–8.4 | CP32_scaffold000038_1385297-CP32_scaffold000038_1853138 | 0.26 | 1.72E-09 | 10.99 | ||
MFSh_4 | Mature fruit shape | 4 | 39.4 | 5.3–9.3 | CP32_scaffold000159_92504-CP32_scaffold000022_375710 | 0.10 | 3.43E-02 | 3.43 | ||
MFSh_5 | Mature fruit shape | 5 | 27.9 | 9.4–11.3 | CP32_scaffold000018_362002-CP32_scaffold000018_549964 | 0.14 | 1.98E-03 | 3.02 | 9.85E-03 | |
MFLe_3 | Mature Fruit length | 3 | 169.1 | 46.7–67.4 | CP32_scaffold000038_1385297-CP32_scaffold000038_1853138 | 4.51 | 2.37E-15 | 38.71 | 1.98E-02 | |
MFLe_12 | Mature fruit length | 12 | 19.3 | 17.8–20.2 | CP32_scaffold000065_389234-CP32_scaffold000065_538115 | 1.88 | 3.72E-06 | 6.64 | ||
MFLe_6 | Mature fruit length | 6 | 19.7 | 25.6–28.7 | CP32_scaffold000003_3022364-CP32_scaffold000003_3087204 | 1.35 | 7.97E-04 | 3.55 | ||
MFLe_9 | Mature fruit length | 9 | 119.3 | 13.8–23.0 | CP32_scaffold000013_890110-CP32_scaffold000013_959962 | 1.86 | 7.84E-06 | 6.21 | ||
MFWi_3 | Mature Fruit width | 3 | 171.0 | 7.04–13.4 | CP32_scaffold000038_1385297-CP32_scaffold000038_1853138 | 0.77 | 8.63E-13 | 15.14 | 3.71E-04 | |
MFWi_12 | Mature fruit width | 12 | 24.9 | 16.7–19.1 | CP32_scaffold000065_760668-CP32_scaffold000074_780275 | 0.55 | 9.55E-07 | 7.42 | 4.31E-04 | 1.89E-02 |
IFRib_3 | Immature fruit ribbing | 3 | 69.4 | 4.1–10.7 | CP32_scaffold000006_3196015-CP32_scaffold000006_3616125 | 0.35 | 1.73E-07 | 8.69 | 2.31E-04 | 2.16E-02 |
MFRib_12 | Mature fruit ribbing | 12 | 110.2 | 14.1–20.5 | CP32_scaffold000031_115435-CP32_scaffold000045_1342921 | 0.23 | 3.11E-09 | 10.66 | 8.62E-03 | |
MFRib_21 | Matre fruit ribbing | 21 | 19.2 | 10.8–19.6 | CP32_scaffold000007_4220403-CP32_scaffold000110_136233 | 0.19 | 6.73E-06 | 6.19 | ||
IPeLe_10 | Immature peduncle length | 10 | 71.3 | 10.7–13.1 | CP32_scaffold000009_272548-CP32_scaffold000009_704495 | 0.64 | 1.32E-06 | 7.61 | ||
IPeLe_16 | Immature peduncle length | 16 | 14.9 | 12.9–15.9 | CP32_scaffold000030_1135277-CP32_scaffold000030_1337312 | 0.46 | 8.94E-04 | 3.67 | ||
MPeLe_14 | Mature peduncle length | 14 | 29.3 | 16.7–19.2 | CP32_scaffold000039_1662180-CP32_scaffold000011_1038061 | 0.42 | 4.67E-04 | 3.98 | ||
ILRCo_4 | Immature rind color, L parameter | 4 | 14.9 | 46.5–58.8 | CP32_scaffold000066_82542-CP32_scaffold000143_78868 | 9.86 | 0.00E + 00 | 40.64 | 2.78E-02 | |
ILRCo_10 | Immature rind color, L parameter | 10 | 99.5 | 9.02–12.6 | CP32_scaffold000029_1388824-CP32_scaffold000029_1802506 | 3.73 | 1.65E-05 | 6.03 | ||
ILRCo_1 | Immature rind color, L parameter | 1 | 75.2 | 12.8–15.9 | CP32_scaffold000046_683368-CP32_scaffold000046_1012066 | 3.00 | 8.31E-04 | 3.67 | ||
IbRCo_4 | Immature rind color, b parameter | 4 | 15.3 | 20.1–22.9 | CP32_scaffold000066_82542-CP32_scaffold000143_130468 | 2.19 | 1.59E-12 | 15.40 | ||
IbRCo_3 | Immature rind color, b parameter | 3 | 62.9 | 11.5–16.7 | CP32_scaffold000006_2344126-CP32_scaffold000006_2759336 | 1.38 | 1.77E-05 | 4.99 | ||
IbRCo_12 | Immature rind color, b parameter | 12 | 27.5 | 9.3–11.9 | CP32_scaffold000074_497940-CP32_scaffold000074_795378 | 0.91 | 5.23E-03 | 2.58 | ||
IaRCo_10 | Immature rind color, a parameter | 10 | 104.9 | 5.9–11.8 | CP32_scaffold000029_1132025-CP32_scaffold000029_1388824 | 1.05 | 3.64E-08 | 9.66 | ||
IaRCo_3 | Immature rind color, a parameter | 3 | 86.1 | 20.3–27.8 | CP32_scaffold000187_88187-CP32_scaffold000187_88366 | 1.17 | 5.86E-10 | 12.06 | 3.09E-02 | 7.17E-03 |
MLRCo_4 | Mature rind color, L parameter | 4 | 14.9 | 65.1–75.9 | CP32_scaffold000066_82542-CP32_scaffold000143_78868 | 12.70 | 0.00E + 00 | 40.30 | 3.20E-02 | |
MLRCo_1 | Mature rind color, L parameter | 1 | 67.3 | 7.1–17.2 | CP32_scaffold000010_400289-CP32_scaffold000175_201011 | 2.47 | 2.54E-02 | 1.60 | 1.50E-02 | |
MLRCo_2 | Mature rind color, L parameter | 2 | 13.2 | 13.4–16.2 | CP32_scaffold000001_4952915-CP32_scaffold000001_5092215 | 3.55 | 1.31E-03 | 3.27 | 1.25E-02 | 4.84E-02 |
MbRCo_4 | Mature rind color, b parameter | 4 | 19.6 | 33.3–39.7 | CP32_scaffold000180_195391-CP32_scaffold000143_294806 | 3.17 | 6.52E-11 | 12.84 | 1.18E-02 | |
MbRCo_19 | Mature rind color, b parameter | 19 | 52.1 | 6.9–12.4 | CP32_scaffold000005_1580923-CP32_scaffold000005_2422557 | 2.63 | 1.49E-07 | 8.51 | 1.34E-02 | |
MaRCo_4 | Mature rind color, a parameter | 4 | 50.44 | 20.02–25.7 | CP32_scaffold000022_598182-CP32_scaffold000022_1004798 | 2.08 | 1.33E-15 | 18.59 | ||
IbFCo_10 | Immature flesh color, b parameter | 10 | 102.9 | 45.1–58.2 | CP32_scaffold000029_1132025-CP32_scaffold000029_1802506 | 1.31 | 3.45E-12 | 15.02 | ||
IaFCo_10 | Immature flesh color, a parameter | 10 | 100.4 | 12.1–15.4 | CP32_scaffold000029_1280511-CP32_scaffold000029_1747554 | 1.05 | 0.00E + 00 | 28.31 | 2.24E-02 | 9.62E-04 |
IaFCo_13 | Immature flesh color, a parameter | 13 | 30.4 | 7.3–9.3 | CP32_scaffold000113_399328-CP32_scaffold000049_351119 | 0.46 | 4.51E-05 | 5.42 | 4.02E-02 | |
MbFCo_19 | Mature flesh color, b parameter | 19 | 52.1 | 55.8–68.8 | CP32_scaffold000005_1580923-CP32_scaffold000005_2422557 | 3.86 | 0.00E + 00 | 62.93 | ||
MaFCo_19 | Mature flesh color, a parameter | 19 | 38.8 | 11.5–15.8 | CP32_scaffold000005_2532610-CP32_scaffold000005_2907973 | 1.12 | 7.77E-16 | 18.86 | 5.64E-05 | 5.45E-03 |
MaFCo_10 | Mature flesh color, a parameter | 10 | 37.89 | 8.8–11.7 | CP32_scaffold000009_1923620-CP32_scaffold000009_2317405 | 0.31 | 3.09E-02 | 1.49 | 3.63E-04 | |
MaFCo_13 | Mature flesh color, a parameter | 13 | 53.1 | 5.4–9.4 | CP32_scaffold000017_2743863-CP32_scaffold000108_169208 | 0.41 | 5.71E-03 | 2.43 | 3.42E-04 |