Table 3 Comparison of the SNP and indel rates of selected organisms
From: An improved genome assembly uncovers prolific tandem repeats in Atlantic cod
Species | SNP rate | Indel rate | N50 contig | N50 scaffold |
|---|---|---|---|---|
| Â | (SNPs/base) | (indels/base) | (kbp) | (Mbp) |
Atlantic cod (gadMor2) | 4.07 × 10 −3 | 0.98 × 10 −3 | 116 | 1.15 |
Sticklebacka | 1.43 × 10 −3 | NA | 83.2 | 10.8 |
Miiuy croakerb | 2.24 × 10 −3 | 0.61 × 10 −3 | 73.3 | 1.15 |
Atlantic herringc | 3.2 × 10 −3 | NA | 21.3 | 1.84 |
Ciona savignyi d | 46 × 10 −3 | NA | 12 | 0.192 |
Ciona savignyi e | 46 × 10 −3 | NA | 47 | 0.989 |