Table 1 Overview of transcriptome sequence assembly
| Â | E50 | E60 | E70 |
|---|---|---|---|
Total clean reads | 57,050,205 | 60,029,490 | 61,295,544 |
Total clean nucleotides | 11,410,041,000 | 12,005,898,000 | 12,259,308,800 |
Total trinity transcripts | 61,057 | 342,255 | 192,448 |
Total trinity components | 49,282 | 279,928 | 158,626 |
Contig N50 | 1379 | 1159 | 825 |
Median contig length | 536 | 352 | 279 |
Average contig | 909 | 695 | 536 |
Total assembled bases | 55,473,630 | 237,734,046 | 103,165,360 |
Percent GC (%) | 48 | 51 | 47 |
Q20 percentage (%) | 98 | 98.4 | 98.6 |