Table 1 Summary of P. xylostella transcriptome mapping to the reference genome
Sample_name | L | M_Ant | F_Ant | H | PG | AB |
|---|---|---|---|---|---|---|
Total reads | 53439024 | 54660234 | 50948026 | 51117268 | 47655468 | 54606672 |
Total mapped | 22601392 (42.29%) | 21647440 (39.6%) | 19691333 (38.65%) | 21606597 (42.27%) | 20826116 (43.7%) | 22742109 (41.65%) |
Multiple mapped | 2634934 (4.93%) | 2802997 (5.13%) | 2425347 (4.76%) | 2059342 (4.03%) | 2283645 (4.79%) | 2736184 (5.01%) |
Uniquely mapped | 19966458 (37.36%) | 18844443 (34.48%) | 17265986 (33.89%) | 19547255 (38.24%) | 18542471 (38.91%) | 20005925 (36.64%) |
Read-1 | 10216135 (19.12%) | 9618895 (17.6%) | 8799050 (17.27%) | 9995946 (19.55%) | 9468501 (19.87%) | 10206183 (18.69%) |
Read-2 | 9750323 (18.25%) | 9225548 (16.88%) | 8466936 (16.62%) | 9551309 (18.69%) | 9073970 (19.04%) | 9799742 (17.95%) |
Reads map to ‘ + ’ | 9980188 (18.68%) | 9391804 (17.18%) | 8600732 (16.88%) | 9758204 (19.09%) | 9242300 (19.39%) | 9976030 (18.27%) |
Reads map to ‘-’ | 9986270 (18.69%) | 9452639 (17.29%) | 8665254 (17.01%) | 9789051 (19.15%) | 9300171 (19.52%) | 10029895 (18.37%) |
Non-splice reads | 13506179 (25.27%) | 12550858 (22.96%) | 11270056 (22.12%) | 10945264 (21.41%) | 12244204 (25.69%) | 13297124 (24.35%) |
Splice reads | 6460279 (12.09%) | 6293585 (11.51%) | 5995930 (11.77%) | 8601991 (16.83%) | 6298267 (13.22%) | 6708801 (12.29%) |