Genetic diversity and signatures of selection in various goat breeds revealed by genome-wide SNP markers

BMC Genomics

Table 10 Linkage disequilibrium (r²) levels for all the breeds in the peak region of chromosome 7

		Average linkage disequilibrium (r²)
Breed	NSNP after QC	Adjacent SNPs (± SD)	Syntenic SNPs (± SD)
AL	179	0.169 ± 0.218	0.054 ± 0.077
BA	173	0.364 ± 0.322	0.134 ± 0.179
BC	164	0.392 ± 0.316	0.154 ± 0.193
CA	178	0.171 ± 0.212	0.085 ± 0.120
LA	112	0.641 ± 0.358	0.263 ± 0.289
NU	154	0.253 ± 0.281	0.091 ± 0.137
RA	187	0.130 ± 0.194	0.031 ± 0.051
SA	179	0.229 ± 0.269	0.087 ± 0.119
TO	163	0.265 ± 0.289	0.126 ± 0.159

AL Alpine, BA Australian Boer, BC Canadian Boer, CA Cashmere, LA LaMancha, NU Nubian, Pop population, RA Rangeland, SA Saanen, TO Toggenburg, QC genotype quality control, SD standard deviation

ISSN: 1471-2164