Table 1 Summary of sequence data and mapping statistics on the TM-1 genome
From: Uncovering SNP and indel variations of tetraploid cottons by SLAF-seq
Species | Gh_E22 | Gb_3–79 | Gt | Gm | Gd |
|---|---|---|---|---|---|
Total reads | 24,655,891 | 21,139,301 | 18,567,855 | 21,126,892 | 26,305,884 |
High-quality reads | 24,650,571 (99.98%) | 21,125,785 (99.98%) | 18,559,296 (99.95%) | 21,109,849 (99.92%) | 26,289,803 (99.94%) |
Sequencing depth (fold) | 1.55 | 1.33 | 1.17 | 1.33 | 1.65 |
Total reads mapped | 20,176,030 (81.85%) | 16,491,915 (78.07%) | 15,223,151 (82.02%) | 17,143,486 (81.21%) | 21,468,542 (81.66%) |
Genome coverage (%) | 5.97% | 6.16% | 7.13% | 6.25% | 6.14% |
Reads mapped with MAPQ30 | 12,480,220 (61.86%) | 9,104,756 (55.21%) | 8,749,989 (57.48%) | 9,833,467 (57.36%) | 13,020,982 (60.65%) |