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Table 3 Highly represented gene families identified in metabolic pathway network analysis

From: Medium term water deficit elicits distinct transcriptome responses in Eucalyptus species of contrasting environmental origin

Cluster

Sub-cluster

Putative gene function (Tair10 definition)

Number of gene family members present in sub-cluster

Number of these gene family members more highly expressed in SS treatment

Number of these gene family members more highly expressed in the WW control

A

i

p450 cytochrome

6

-

6

A

i

2-oxoglutarate and Fe(II)- dependent oxygenase

2

2

-

A

i

Chalcone and stilbene synthase

2

-

2

A

ii

UDP-glucosyl transferase

6

-

6

A

iii

O-methyltransferase

4

1

3

A

iii

P-loop containing nucleoside triphosphate

2

-

2

A

iii

ATP-dependent caseinolytic (Clp) protease/crotonase

2

2

-

A

iv

Cinnamyl-alcohol dehydrogenase

4

4

-

A

iv

Caffeoyl-CoA 3-O-methyltransferase

2

-

2

B

i

Rhamnose biosynthesis

2

-

2

B

i

UDP-D-glucuronate 4-epimerase

2

-

2

B

ii

Phosphofructokinase

3

1

2

B

ii

ATP-citrate lyase

2

-

2

B

iii

AMP-dependent synthetase and ligases

2

1

1

B

iii

Phospholipases

2

-

2

B

iv

AMP-dependent synthetase and ligase

2

-

2

B

v

Aldehyde dehydrogenase

4

2

2

B

v

Acyl-activating enzyme

2

1

1

B

v

UDP-glucosyl transferase

2

-

2

B

vi

Tyrosine transaminase

3

2

1

B

vi

2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase

3

-

3

B

vi

Homogentisate 1,2-dioxygenase

2

2

-

  1. Gene families more highly represented in sub-clusters within cluster A and B identified as part of the network pathway analysis in Cytoscape (Fig. 3)