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Table 4 The expression patterns of related genes for anthocyanin biosynthesis and transportation

From: Transcriptomic profiling of two Pak Choi varieties with contrasting anthocyanin contents provides an insight into structural and regulatory genes in anthocyanin biosynthetic pathway

   

FPKM

 

Gene ID

Gene annotation

‘G’

‘P’

Biosynthetic genes in phenylpropanoid pathway

Bra017210

Phenylalanine ammonia-lyase 1

3566.60

8616.42

Bra039777

Phenylalanine ammonia-lyase 2

930.36

7009.32

Bra006985

Phenylalanine ammonia-lyase 2

3299.06

18.24

Bra031266

4-coumarate--CoA ligase 2

216.25

624.71

Bra021637

Transcinnamate 4-monooxygenase

939.76

4518.74

Early Biosynthetic Genes

Bra009101

Probable chalcone--flavonone isomerase 3

1281.89

5917.44

Bra037747

Flavonol synthase/flavanone 3-hydroxylase

0

26.11

Bra029212

Flavonol synthase 3

790.26

328.98

Late Biosynthetic Genes

Bra027457

Dihydroflavonol-4-reductase

67.91

15507.10

Bra013652

Leucoanthocyanidin dioxygenase

79.26

11936.77

Bra019350

Leucoanthocyanidin dioxygenase

23.6186

4969.47

Bra035004

Anthocyanidin 3-O-glucosyltransferase

10.15

1736.71

Bra003021

Anthocyanidin 3-O-glucosyltransferase

5.63

1011.59

Bra038445

UDP-glycosyltransferase 75C1

56.36

10314.18

Bra011292

Caffeic acid 3-O-methyltransferase 1

19.03

276.83

Bra034600

Caffeoyl-CoA O-methyltransferase 1

1080.65

6484.01

Bra003009

Quercetin 3-O-methyltransferase 1

8040.55

568.33

Bra003707

Caffeic acid 3-O-methyltransferase OS

159.46

1.43

Transport genes in anthocyanin pathway

Bra009033

Protein TRANSPARENT TESTA 12

22.96

3.61

Bra016610

ATPase 10, plasma membrane-type

0.30

63.40

Bra024452

ATPase 1, plasma membrane-type

6.84

199.33

Bra008570

Glutathione S-transferase F12

12.02

2134.23

Bra023602

Glutathione S-transferase F12

195.28

2391.95

  1. ‘G’: Green-leafed variety; ‘P’: Purple-leafed variety